Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq578 203 8e-47 seq650 145 2e-29 >seq578 Length=360407 Score = 203 bits (224), Expect = 8e-47 Identities = 180/225 (80%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| |||||||| || ||||| || |||||||| || |||| |||||| Sbjct 306162 ACGAAGGCGGAGGACGAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAAAGGGT 306221 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||| |||||||| || || ||||| || || || || ||||| |||| ||| Sbjct 306222 GCGACCATCTTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGATCAGGGGGAATTCC 306281 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||||||||||||| || ||||| ||||||||||| || || |||||||| Sbjct 306282 TTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCGAG 306341 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||||||||| |||||||| || || ||||| | |||||| || Sbjct 306342 GGTGATCGTCTTACCCGTGAGGGTTTTAACAAAGATCTGCATCTT 306386 Score = 188 bits (208), Expect = 2e-42 Identities = 169/212 (80%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || ||||| ||||||||||| || ||||| ||||||| ||||| | ||||| Sbjct 207294 AGAACGAGATGAAGGGTGGACTCTTTCTGAATGTTGTAATCCGAGAGGGTACGGCCATCC 207235 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| || || || || |||||||||| ||||||||||||| Sbjct 207234 TCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGAGGAATTCCTTCCTTGTCC 207175 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || |||||||| || || |||||||| ||||| ||| Sbjct 207174 TGGATCTTGGCCTTGACATTGTCAATGGTGTCCGAAGGCTCGACCTCGAGGGTGATGGTC 207115 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| ||||| | |||||| Sbjct 207114 TTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 207083 Score = 176 bits (194), Expect = 1e-38 Identities = 172/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | |||||||| || | ||| ||||| || |||||||| || || | ||||| Sbjct 207532 ACGAAGACGGAGGACAAGATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGT 207473 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||| ||||||||||| || ||||| || || || || ||||| |||| || Sbjct 207472 GCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCAGGGGGAATACC 207413 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||| ||||| || ||||| || |||||||||||| || ||||| || Sbjct 207412 CTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCAATGGTGTCAGAGGACTCGACCTCAAG 207353 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||| ||||| || || | |||||| ||||| | |||||| Sbjct 207352 AGTGATGGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 207311 >seq650 Length=146785 Score = 145 bits (160), Expect = 2e-29 Identities = 145/188 (77%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||||||||| |||||||| || |||||||| || |||| ||||| | || || Sbjct 130922 AGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCC 130981 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || || ||||| || || || ||||| || || | || ||||||||| Sbjct 130982 TCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCGGGGGGGATACCCTCCTTGTCC 131041 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||||||||| || || ||||| || ||||| ||| Sbjct 131042 TGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTC 131101 Query 211083 TTTCCCGT 211090 || || || Sbjct 131102 TTACCTGT 131109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159141410784245