Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq580 102 7e-17 >seq580 Length=301176 Score = 102 bits (112), Expect = 7e-17 Identities = 357/554 (64%), Gaps = 15/554 (3%) Strand=Plus/Plus Query 4548 CACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAAT 4607 || |||||||| || | ||| ||||| | || || |||||||| || || | Sbjct 40678 CAGGCAAAATCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAGGTGAGA 40737 Query 4608 CCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAAT 4667 |||||||| | ||| | ||| || ||||| || || | |||||| || || || ||||| Sbjct 40738 CCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGAGGCAAAGGAGCCTGAGAAGAAG 40797 Query 4668 ATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTT---GTCT 4724 || ||||| ||||||||||| || || | || ||| || |||| || ||| Sbjct 40798 ATACCTTCGACGGCGGCAAAGGCAACGAGACGCTCAGCGA---AGGTGGCCTTGCGGTCG 40854 Query 4725 TTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCG 4784 || |||||| | ||||| | || || ||||| ||| || || || | | ||| Sbjct 40855 TTGATCCATCGAAGGGCCCATTCGGCCTTCTTCTTGACGACGGGGATGGTCTCGACGGCG 40914 Query 4785 TTAAA---TAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTA 4841 | ||| || | | | || || || | || || ||||| || || || Sbjct 40915 TCAAAGAGGAACTCGCGCTGCTC---GGGCTCGCGGATGTAGGTGTCGATGAGGAGCGAG 40971 Query 4842 TACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCT 4901 || |||| || || || || || || ||||| || ||||| ||||||| || || Sbjct 40972 TAGGTTTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGGGCCTCG 41031 Query 4902 GTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTG 4961 | | || || ||| || || | || || | ||||||||| || ||||||||| Sbjct 41032 GCGGCCTGGACCTCGGAACTGAAGCGCTCGACGAGGTTTTCGTTGACGATACCGTCAGAA 41091 Query 4962 GCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTT- 5020 || || || || || | || ||||| || |||| | |||| || || || || Sbjct 41092 GCGGCGAAGAAGGCAAGGACGTGAGAGATGAAGTGACGCTCGTTGTCGTTGAGCTTGTTG 41151 Query 5021 --CCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCC 5078 ||||| | | | || || | | || | ||| || | ||||| || || || || Sbjct 41152 TCCCAGTCGTGAAGGTCCTTGGAGAGGTCGATTTCCTCGGCGGTCCAGAAGGAAGCCTCG 41211 Query 5079 GCTTTTTTGTACAT 5092 || || |||||||| Sbjct 41212 GCCTTCTTGTACAT 41225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427045889072429