Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq580 109 8e-19 >seq580 Length=301176 Score = 109 bits (120), Expect = 8e-19 Identities = 359/557 (64%), Gaps = 6/557 (1%) Strand=Plus/Plus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || |||||||| |||||||| || || | | || | |||||||| || |||||| Sbjct 40678 CAGGCAAAATCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAGGTGAGA 40737 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAAT 48260 |||||||| || || || || |||||||| || || | || || || || || ||||| Sbjct 40738 CCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGAGGCAAAGGAGCCTGAGAAGAAG 40797 Query 48261 ATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTT---CGTTGTGT 48317 || ||||| ||||| ||||| || || | ||| || | |||| | || || Sbjct 40798 ATACCTTCGACGGCGGCAAAGGCAACGAGACGCTCAGCGAAGGTGGCCTTGCGGTCGTTG 40857 Query 48318 ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 48377 ||||| || | ||||| || ||||||||||| || || || || || | || | | Sbjct 40858 ATCCATCGAAGGGCCCATTCGGCCTTCTTCTTGACGACGGGGATGGTCTCGACGGCGTCA 40917 Query 48378 AAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATT 48437 ||||| || | | | | || | ||| || || || | || || || Sbjct 40918 AAGAGGAACTCGCGCTGCTCGGGCTCGCGGATGTAGGTGTCGATGAGGAGCGAGTAGGTT 40977 Query 48438 TCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATC 48497 |||||||| || || || || ||||| || ||||| || |||| || || | | | Sbjct 40978 TCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGGGCCTCGGCGGCC 41037 Query 48498 TGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCA 48557 || ||||| | || || || || | | || || || || || || ||| ||| || Sbjct 41038 TGGACCTCGGAACTGAAGCGCTCGACGAGGTTTTCGTTGACGATACCGTCAGAAGCGGCG 41097 Query 48558 AAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATT---CCAG 48614 || || || | || || || || | |||||| | || || || |||| Sbjct 41098 AAGAAGGCAAGGACGTGAGAGATGAAGTGACGCTCGTTGTCGTTGAGCTTGTTGTCCCAG 41157 Query 48615 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTT 48674 || | | || || || | || | ||| || || ||||| || || ||||| || || Sbjct 41158 TCGTGAAGGTCCTTGGAGAGGTCGATTTCCTCGGCGGTCCAGAAGGAAGCCTCGGCCTTC 41217 Query 48675 TTATACATATTCCATAT 48691 || ||||| | ||| || Sbjct 41218 TTGTACATTTGCCAGAT 41234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694662608764320