Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq578 150 4e-31 seq650 127 5e-24 >seq578 Length=360407 Score = 150 bits (166), Expect = 4e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || ||||| ||||| || || ||||||||||||||||| || || ||| Sbjct 306380 CAGATCTTTGTTAAAACCCTCACGGGTAAGACGATCACCCTCGAGGTCGAGTCTTCGGAC 306321 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| |||||||| || || || ||||| Sbjct 306320 ACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCTGATCAGCAG 306261 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || |||||||||||||| | || ||| | || || ||| || Sbjct 306260 CGTCTCATCTTTGCTGGTAAGCAGCTCGAAGATGGTCGCACCCTTTCGGACTACAACATC 306201 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 306200 CAGAAGGAGTCTACCCTTCACCTCGT 306175 Score = 143 bits (158), Expect = 6e-29 Identities = 156/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || ||||| || || || |||||||||||||| || || ||| Sbjct 207086 CAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGCCTTCGGAC 207145 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| ||||| |||||||| |||||||| ||||| || ||||| Sbjct 207146 ACCATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCTGATCAGCAG 207205 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || |||||||| ||||| | || || | ||||| ||| | Sbjct 207206 CGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGTACCCTCTCGGATTACAACATT 207265 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || ||||| || || || ||||| ||| Sbjct 207266 CAGAAAGAGTCCACCCTTCATCTCGTT 207292 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||| | || || || || ||||| || ||||| || ||| ||| Sbjct 207314 CAGATCTTTGTCAAGACTTTGACCGGCAAGACCATCACTCTTGAGGTCGAGTCCTCTGAC 207373 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| |||||||||||||| || || || || || || ||||| Sbjct 207374 ACCATTGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGTATTCCCCCTGATCAGCAG 207433 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || ||||| |||||||| | || || |||| || ||| || Sbjct 207434 CGTCTCATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAACATC 207493 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || |||||||||| Sbjct 207494 CAGAAGGAGTCGACTTTGCATCTTGT 207519 >seq650 Length=146785 Score = 127 bits (140), Expect = 5e-24 Identities = 139/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 ||||| || || |||||||| |||||||| || ||||||||||| |||||||| Sbjct 131109 ACAGGTAAGACCATCACCCTTGAGGTGGAGTCTTCCGACACCATCGACAACGTCAAGGCC 131050 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| |||||||| || || ||||| || |||||||| || || ||||| || || || Sbjct 131049 AAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAGCAGCGTCTCATCTTTGCTGGTAAG 130990 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 |||||||| || || | || || | || || ||| |||| || || || || || || Sbjct 130989 CAGCTCGAGGACGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCCACCCTTCAC 130930 Query 178125 CTTGT 178129 ||||| Sbjct 130929 CTTGT 130925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203720203539322