Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq578 134 1e-26 seq650 113 4e-20 >seq578 Length=360407 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | || ||||||| || ||||||||| ||||| ||||||||| Sbjct 207537 CCGCCACGAAGACGGAGGACAAGATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGAG 207478 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || |||||||||||||| || || || ||||| || || | |||| Sbjct 207477 AGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCAGGGGGA 207418 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| | || || | ||| | | | ||||| ||||| || Sbjct 207417 ATACCCTCCTTGTCC-TGAATCTTGGCCTTGACGTTGTCAATGGTGTCAGAGGACTCGAC 207359 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || || |||| ||||| || || |||||||| Sbjct 207358 CTCAAGAGTGATGGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 207311 Score = 107 bits (118), Expect = 2e-18 Identities = 143/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||| ||||| ||||| || |||||||| | || ||||||||||| || || || Sbjct 306192 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGACCATCTTCGAGCTGCTTACCAGCAAA 306251 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 || || ||||| || || | ||||| | ||||||||| || | || || | ||| Sbjct 306252 GATGAGACGCTGCTGATCAGGGGGAATTCCTTCCTTGTCC-TGGATCTTGGCCTTGACGT 306310 Query 41791 CGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849 | | | ||||| ||||| ||||| | || ||||| |||||||| || || || | Sbjct 306311 TGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATCGTCTTACCCGTGAGGGTTTTAA 306370 Query 41850 CGAAAATCTGCATGTT 41865 | || |||||||| || Sbjct 306371 CAAAGATCTGCATCTT 306386 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || ||||| || ||| ||| ||||||||||| || || ||| Sbjct 207309 CCACCACGGAGGCGGAGAACGAGATGAAGGGTGGACTCTTTCTGAATGTTGTAATCCGAG 207250 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || |||||||||||||| ||||| || || ||||| || || | ||| Sbjct 207249 AGGGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGAGGA 207190 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||||||| || | || || | || | | | ||||| | ||| || Sbjct 207189 ATTCCTTCCTTGTCC-TGGATCTTGGCCTTGACATTGTCAATGGTGTCCGAAGGCTCGAC 207131 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || || || || ||||| || || |||||||| Sbjct 207130 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 207083 >seq650 Length=146785 Score = 113 bits (124), Expect = 4e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || ||| ||||||||| ||||| ||||| ||| Sbjct 130907 CCACCACGGAGACGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAG 130966 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| ||||||||||| || || || || || ||||| ||||| | ||| Sbjct 130967 AGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCGGGGGGG 131026 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| || | || || | ||| | | | |||||| |||||||| Sbjct 131027 ATACCCTCCTTGTCC-TGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 131085 Query 41815 CTCCACCGTTATCGTTTTACCCGT 41838 ||| | || || || ||||| || Sbjct 131086 CTCAAGGGTGATGGTCTTACCTGT 131109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462299879715600