Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001599495.1_202016-03-01] 56 sequences; 19,606,871 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq21 122 1e-22 seq29 109 7e-19 >seq21 Length=360673 Score = 122 bits (134), Expect = 1e-22 Identities = 446/695 (64%), Gaps = 10/695 (1%) Strand=Plus/Plus Query 63221 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63280 ||| || || | || ||||| | |||||| || |||| | || || | ||||| || Sbjct 300121 AGGGCACTCGTTGGGGCACATGAGCGACCAGTCGCCGTTCTGCTCGACCCTCTTCATGAA 300180 Query 63281 GAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTG 63339 ||||||||| | ||| || || ||| || || || | | | ||||| ||||| Sbjct 300181 GAGATCAGGCACCCAGAGTGC-ATAGAAGAGCTCACGCGCACGCACCTCCTCCTTTCCGT 300239 Query 63340 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 63399 ||||| || ||||||||| | | | || || ||||| ||||| | ||| || | Sbjct 300240 GGTTCTTGCGCAGGTCGAGGAACTCAAAGACGTCCGAGTGCCATGGTTCAATGTAAATAG 300299 Query 63400 CCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 63459 | | | || || || ||||| || ||||| || | ||| | || ||||| || | | Sbjct 300300 CAAAGGCACCGGGACGCTTGTTGCCACCCTGGTCGACGTAGCGCGCAGTGTTGTTGAAGA 300359 Query 63460 CTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCAC 63519 | | | ||| || | ||| ||||| | ||| ||||| |||| || || || Sbjct 300360 CGCGGAGCATGGGCACAATGCCGTTGCTGACACCGTTGGTGCCGGCAATGTACGAGCCGG 300419 Query 63520 TGGCACGAATATTACTAATTGAT----AGACCTATTCCCCCTGCCATTTTAGAGATTAAT 63575 || |||| || ||| ||| || || || || || ||| | || ||||| | Sbjct 300420 TGCCACGGATGC----AATGGATGTTGAGGCCGATGCCACCGGCCGTCTTGGAGATCATG 300475 Query 63576 GCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGA 63635 || || || | || || |||||||| || || ||||| ||||| ||| || Sbjct 300476 GCACAAGTCTTGAGGGTATCGTAGATGCCGTCGATCGAGTCATCCTTCATGGTAACAAGG 300535 Query 63636 AAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 63695 || || || | || | | | || || || || || | ||||| || ||||| Sbjct 300536 AAGCACGACGAGAGCTGCGGGTGCGGGGTACCGGCGTTGAAGAGCGTAGGCGAGGCGTGG 300595 Query 63696 GTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGA 63755 ||||| | |||| || | || ||||||||||| || || || || ||| Sbjct 300596 GTAAAGTACTTTTGCGACATAAGGTTGTACGTCTCGATGGCGCTCTCGATGTCCTGGCCG 300655 Query 63756 TGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTT 63815 || || || || ||||| ||||| | ||||||||| || | || | | ||| ||| Sbjct 300656 TGGATGCCGACAGCGACTCGCATGAGCATGTGCTGGGGACGCTCTGCGACCTTGCCGTTG 300715 Query 63816 ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 63875 || | ||| ||||| || | || || || || ||| ||||||| ||||| Sbjct 300716 ATGCGGAGCAAATAGGAACGCTCGAGCGTCTTGAAGCCGAAAAAGTTGTAGTGGAAGTCA 300775 Query 63876 CGTTCGTAAATAATAACCGAATTGAGCTTATCCTT 63910 |||||||| || || |||| | ||||| ||||| Sbjct 300776 CGTTCGTAGATGATGGCCGAGTCGAGCTGGTCCTT 300810 >seq29 Length=43685 Score = 109 bits (120), Expect = 7e-19 Identities = 353/544 (65%), Gaps = 8/544 (1%) Strand=Plus/Plus Query 33596 GTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCC 33655 ||| ||||||||||| | || | ||||| || |||||||| |||||||| || || Sbjct 29999 GTGAAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAACGTGAGACCGGGCATGAGACC 30058 Query 33656 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGC 33715 ||||| || ||||| || || || |||||||| || || || ||||| || || || || Sbjct 30059 GCGCTTCTTGAGCCAGAAGATCGAGGCGAATGAGCCCGAGAAAAAGATGCCCTCGACGGC 30118 Query 33716 AGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC---TGTCATGTATCCACTTTTGAGC 33772 ||||| || | || | ||| | || ||| | |||| ||||| |||| Sbjct 30119 GGCAAACGCGACCAGACGCTCGGCGAAAGTGGCACGCTTGTCGCTGATCCATCGAAGAGC 30178 Query 33773 CCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttt 33832 ||| |||||||||| || || || || || || | ||| | ||| ||||| | Sbjct 30179 CCAGTCGGCCTTCTGCTTGACGACCGGGATGGTCTCGACGGCGTCAAACAGATATTCACG 30238 Query 33833 ttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTT 33892 | | | || | ||||| ||||| | || || | ||||| || ||||| Sbjct 30239 CTGCTCAGGCTCACGGATGTAAGTGTCGATGAGCAGCGAGTAGGTCTCCGAGTGGATGTT 30298 Query 33893 TTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACA 33952 || || ||||| || |||||||| || | |||||||| ||| ||||| | || Sbjct 30299 CTCCATCATGATCTGGAAACCGTAGAAGCAACGAGCCTCGGCGGCCTGAACTTCCGAACT 30358 Query 33953 AAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATAC 34012 || || || | | || || || || || ||||| || || || ||||| | || Sbjct 30359 GAAACGCTCAACGAGGTTCTCGTTGACGATACCATCCGACGCAGCGAAGAACGCAAGCAC 30418 Query 34013 ATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATT---CCAATCATTGATATCTT 34068 ||| ||||| | || | || ||| || || || ||| || | || || | Sbjct 30419 ATGCGAGATAAAGTGGCGCTCAT-TGTCGTTCAGCTTGTTGTCCCAGTCGTGGAGGTCCT 30477 Query 34069 TAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 34128 | || | || | || || | ||||| || || ||||| ||||| || ||||| | || Sbjct 30478 TGGAAAGGTCGATCTCCTCTGCGGTCCAGAAGGAAGCCTCGGCCTTCTTGTACATTTGCC 30537 Query 34129 AGAT 34132 | || Sbjct 30538 AAAT 30541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817159127680