Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001599495.1_202016-03-01] 56 sequences; 19,606,871 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq10 134 3e-26 seq4 93.3 1e-13 >seq10 Length=589446 Score = 134 bits (148), Expect = 3e-26 Identities = 158/211 (75%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||| || || | || || ||||||||||| || ||||| || || |||| |||||||| Sbjct 214674 TACAAGGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCGGAGAGCGTTCGGCCGTCTTC 214615 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 || || || ||||| || || || | ||| ||||||||||| || ||||| || ||||| Sbjct 214614 GAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTG 214555 Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCT 104528 ||||| || || || || || | ||| || | ||| || || || || ||||| |||| Sbjct 214554 GATCTTGGCCTTGACGTTGTCGATGGTGTC-CGAGGACTCGACTTCGAGAGTAATGGTCT 214496 Query 104529 TACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | || || || || || ||||| |||||||| Sbjct 214495 TGCCCGTGAGCGTCTTAACAAAAATCTGCAT 214465 Score = 125 bits (138), Expect = 2e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| |||||||| || ||||| || ||||| | ||| ||||| || || || || Sbjct 214889 GTGGATTCCTTCTGAATGTTGTAGTCCGACAGAGTGCGACCATCTTCGAGCTGCTTGCCG 214830 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| ||||||||||| || ||||| || || || ||||| || || Sbjct 214829 GCAAAGATAAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTG 214770 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| || || || || || || || || ||||| || || || || Sbjct 214769 ACGTTGTCGATGGTGTCCGAAGACTCGACTTCGAGAGTGATGGTCTTGCCTGTGAGCGTC 214710 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 214709 TTGACAAAGATCTGCAT 214693 >seq4 Length=1388522 Score = 93.3 bits (102), Expect = 1e-13 Identities = 130/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| ||||| || || ||||| || || || | || || || || || || || Sbjct 1196009 GTCGATTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCGAGCTGCTTACCG 1195950 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || || || || || || || || ||||||||||| || || Sbjct 1195949 GCGAAGATCAGGCGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGAATCTTGGCCTTG 1195890 Query 104483 ACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | ||| || | ||| || ||||| || ||||| |||||||| || |||| Sbjct 1195889 ACATTGTCGATGGTGTC-CGAGGACTCCACCTCAAGGGTAATGGTCTTACCTGTTGGTGT 1195831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151397573871648