Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001599495.1_202016-03-01] 56 sequences; 19,606,871 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq10 102 7e-17 >seq10 Length=589446 Score = 102 bits (112), Expect = 7e-17 Identities = 164/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || |||| | | ||| || || || || |||||| || |||||||| || | Sbjct 294528 ACCACCACGCAGACGAAGCACCAAGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGA 294587 Query 48559 CAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || || || ||||||| ||||||||||| || | || | ||||||||| || || Sbjct 294588 -AAGCGTACGTCCGTCCTCGAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGCG 294646 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | ||||||||| || || ||||| | | ||||| || | ||||||| Sbjct 294647 GAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCCA 294706 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 ||||| || ||||| ||||| ||||| || || ||||| ||||||||| || Sbjct 294707 CCTCGAGAGTGATGGTCTTACCCGTGAGGGTCTTGACAAAGATCTGCATCTTG 294759 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| || ||| || ||||||||||| || | | ||| |||| || |||||| Sbjct 214667 TGAAGCGTCGACTCTTTCTGAATGTTGTAGTCGGAGAGCGTTCGGCCGTCTTCGAGCTGC 214608 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 ||||| || | || | |||||||||||| || | | |||||||||| || || Sbjct 214607 TTACCAGCGAAGATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTTG 214548 Query 48644 TGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 ||||| | | || ||||| || | ||||| |||| || ||||| || || | Sbjct 214547 GCCTTGACGTTGTCG--ATGGTGTCCGAGGACTCGACTTCGAGAGTAATGGTCTTGCCCG 214490 Query 48702 TGAGAGTTTTCACAAAAATCTGCATC 48727 |||| || || ||||||||||||||| Sbjct 214489 TGAGCGTCTTAACAAAAATCTGCATC 214464 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTC 48576 || || ||||| ||| ||||| ||||||||||| || | || | || || | || || Sbjct 214901 ACCAAGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCCGACAGAGTG-CGACCATCTTC 214843 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||| ||| | | || | |||||||||||| || | | ||||||||| Sbjct 214842 GAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTG 214783 Query 48637 AATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 || || ||||| | | || ||||| || | |||||| |||| || ||||| Sbjct 214782 GATCTTGGCCTTGACGTTGTCG--ATGGTGTCCGAAGACTCGACTTCGAGAGTGATGGTC 214725 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || ||||| || || ||||| |||||||| Sbjct 214724 TTGCCTGTGAGCGTCTTGACAAAGATCTGCAT 214693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421250912496056