Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001599495.1_202016-03-01] 56 sequences; 19,606,871 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq21 127 3e-24 seq29 114 2e-20 >seq21 Length=360673 Score = 127 bits (140), Expect = 3e-24 Identities = 468/730 (64%), Gaps = 10/730 (1%) Strand=Plus/Plus Query 63135 CGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAAC 63194 || || |||||||| || | | | ||| ||||| || || | || ||||| | | Sbjct 300086 CGCTCAAACTCGTCACCGTAGCAGTCGGCCAGACCAGGGCACTCGTTGGGGCACATGAGC 300145 Query 63195 GACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 63254 ||||| || |||| | || || | ||||| ||||||||||| | ||| || || ||| Sbjct 300146 GACCAGTCGCCGTTCTGCTCGACCCTCTTCATGAAGAGATCAGGCACCCAGAGTGC-ATA 300204 Query 63255 -AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 63313 || || || | | | ||||| ||||| ||||| || ||||||||| | Sbjct 300205 GAAGAGCTCACGCGCACGCACCTCCTCCTTTCCGTGGTTCTTGCGCAGGTCGAGGAACTC 300264 Query 63314 CATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCC 63373 | | || || ||||| ||||| | ||| || || | | || || || ||||| || Sbjct 300265 AAAGACGTCCGAGTGCCATGGTTCAATGTAAATAGCAAAGGCACCGGGACGCTTGTTGCC 300324 Query 63374 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTT 63433 ||||| || | ||| | || ||||| || | || | | ||| || | ||| ||||| Sbjct 300325 ACCCTGGTCGACGTAGCGCGCAGTGTTGTTGAAGACGCGGAGCATGGGCACAATGCCGTT 300384 Query 63434 TGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT-- 63491 | ||| ||||| |||| || || || || |||| || ||| ||| Sbjct 300385 GCTGACACCGTTGGTGCCGGCAATGTACGAGCCGGTGCCACGGATGC----AATGGATGT 300440 Query 63492 --AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGA 63549 || || || || || ||| | || ||||| | || || || | || || |||| Sbjct 300441 TGAGGCCGATGCCACCGGCCGTCTTGGAGATCATGGCACAAGTCTTGAGGGTATCGTAGA 300500 Query 63550 TACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 63609 | || || || ||||| ||||| ||| || || || || | || | | Sbjct 300501 TGCCGTCGATCGAGTCATCCTTCATGGTAACAAGGAAGCACGACGAGAGCTGCGGGTGCG 300560 Query 63610 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGAT 63669 || || || || || | ||||| || ||||| ||||| | |||| || | || | Sbjct 300561 GGGTACCGGCGTTGAAGAGCGTAGGCGAGGCGTGGGTAAAGTACTTTTGCGACATAAGGT 300620 Query 63670 TGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTA 63729 |||||||||| || || || || ||| || || || || ||||| ||||| | Sbjct 300621 TGTACGTCTCGATGGCGCTCTCGATGTCCTGGCCGTGGATGCCGACAGCGACTCGCATGA 300680 Query 63730 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63789 ||||||||| || | || ||| |||| ||| || | ||| ||||| || | Sbjct 300681 GCATGTGCTGGGGACGCTCTGCGACCTTGCCGTTGATGCGGAGCAAATAGGAACGCTCGA 300740 Query 63790 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGA 63849 || || || || ||| ||||||| ||||| |||||||| || || |||||| || Sbjct 300741 GCGTCTTGAAGCCGAAAAAGTTGTAGTGGAAGTCACGTTCGTAGATGATGGCCGAGTCGA 300800 Query 63850 GTTTATCCTT 63859 | | ||||| Sbjct 300801 GCTGGTCCTT 300810 >seq29 Length=43685 Score = 114 bits (126), Expect = 2e-20 Identities = 354/544 (65%), Gaps = 8/544 (1%) Strand=Plus/Plus Query 33318 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 33377 ||| ||||||||||| | || || |||||||| |||||||| |||||||| || || Sbjct 29999 GTGAAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAACGTGAGACCGGGCATGAGACC 30058 Query 33378 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGC 33437 ||||| || ||||| || || || |||||||| || || || ||||| || || || || Sbjct 30059 GCGCTTCTTGAGCCAGAAGATCGAGGCGAATGAGCCCGAGAAAAAGATGCCCTCGACGGC 30118 Query 33438 AGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC---TGTCATGTATCCACTTTTGAGC 33494 ||||| || | || | ||| | || ||| | |||| ||||| |||| Sbjct 30119 GGCAAACGCGACCAGACGCTCGGCGAAAGTGGCACGCTTGTCGCTGATCCATCGAAGAGC 30178 Query 33495 CCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttt 33554 ||| |||||||||| || || || || || || | ||| | ||| ||||| | Sbjct 30179 CCAGTCGGCCTTCTGCTTGACGACCGGGATGGTCTCGACGGCGTCAAACAGATATTCACG 30238 Query 33555 ttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTT 33614 | | | || | ||||| ||||| | || || | ||||| || ||||| Sbjct 30239 CTGCTCAGGCTCACGGATGTAAGTGTCGATGAGCAGCGAGTAGGTCTCCGAGTGGATGTT 30298 Query 33615 TTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACA 33674 || || ||||| || |||||||| || | |||||||| ||| ||||| | || Sbjct 30299 CTCCATCATGATCTGGAAACCGTAGAAGCAACGAGCCTCGGCGGCCTGAACTTCCGAACT 30358 Query 33675 AAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 33734 || || || | | || || || || || || || || || || ||||| | || Sbjct 30359 GAAACGCTCAACGAGGTTCTCGTTGACGATACCATCCGACGCAGCGAAGAACGCAAGCAC 30418 Query 33735 ATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATT---CCAATCATTGATATCTT 33790 ||| ||||| | || | || ||| || || || ||| || | || || | Sbjct 30419 ATGCGAGATAAAGTGGCGCTCAT-TGTCGTTCAGCTTGTTGTCCCAGTCGTGGAGGTCCT 30477 Query 33791 TAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCC 33850 | || | || | || || | ||||| || || ||||| ||||| || ||||| | || Sbjct 30478 TGGAAAGGTCGATCTCCTCTGCGGTCCAGAAGGAAGCCTCGGCCTTCTTGTACATTTGCC 30537 Query 33851 AGAT 33854 | || Sbjct 30538 AAAT 30541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622946763936960