Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001599495.1_202016-03-01] 56 sequences; 19,606,871 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq21 295 2e-74 >seq21 Length=360673 Score = 295 bits (326), Expect = 2e-74 Identities = 1162/1799 (65%), Gaps = 54/1799 (3%) Strand=Plus/Minus Query 363389 TTTTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGTTG 363448 ||||||| | |||||| | ||| ||||| | || ||||| || | | | | Sbjct 300758 TTTTCGGCTTCAAGACGCTCGAGCGTTCCTATTTGCTCCGCATCAACGGCAAGGTCGCAG 300699 Query 363449 AACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATG 363508 | || || ||||| ||| | ||||| || ||| | || ||||| ||| ||| | || Sbjct 300698 AGCGTCCCCAGCACATGCTCATGCGAGTCGCTGTCGGCATCCACGGCCAGGACATCGAGA 300639 Query 363509 CCGCGATTGAAACATATAAGCTTCTAAGT-GCTCGTGTA-TTCACGCACGCCACGCCAAC 363566 ||| || || || || || ||| | || || ||| || || |||||| |||| || Sbjct 300638 GCGCCATCGAGACGTACAACCTTAT--GTCGCAAAAGTACTTTACCCACGCCTCGCCTAC 300581 Query 363567 AATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAA 363626 | | ||| || || || | | || ||| | || || ||||| ||| | | ||||| Sbjct 300580 GCTCTTCAACGCCGGTACCCCGCACCCGCAGCTCTCGTCGTGCTTCCTTGTTACCATGAA 300521 Query 363627 GGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAA 363686 ||| || || ||||| || |||| || || || |||| |||||| | || ||||||| Sbjct 300520 GGATGACTCGATCGACGGCATCTACGATACCCTCAAGACTTGTGCCATGATCTCCAAGAC 300461 Query 363687 TGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTG-CACAGAACAGTTACATTCGCG 363745 || || || || || | ||||| | |||| ||| | || ||||| || Sbjct 300460 GGCCGGTGGCATCGGCCTCAACATCCATTGCATCCGTGGCACCGGCTCGT-ACATTGCCG 300402 Query 363746 GCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGA 363805 |||| || | || || | || |||||||| || || || |||| |||||| Sbjct 300401 GCACCAACGGTGTCAGCAACGGCATTGTGCCCATGCTCCGCGTCTTCAACAACACTGCGC 300342 Query 363806 GGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTC 363865 | ||||||||||||||||| ||||| || || |||||||| || | || || Sbjct 300341 GCTACGTCGACCAGGGTGGCAACAAGCGTCCCGGTGCCTTTGCTATTTACATTGAACCAT 300282 Query 363866 ATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGC 363925 || | || | |||||||| || || || || || ||| ||||| ||||| ||| Sbjct 300281 GGCACTCGGACGTCTTTGAGTTCCTCGACCTGCGCAAGAACCACGGAAAGGAGGAGGTGC 300222 Query 363926 GTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGG 363985 |||| ||||| || ||||||||||| ||||| |||| | || |||||| | || || | Sbjct 300221 GTGCGCGTGAGCTCTTCTATGCACTCTGGGTGCCTGATCTCTTCATGAAGAGGGTCGA-G 300163 Query 363986 CAGGTAAG-AATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGG 364044 ||| | | ||||| ||| | ||||| |||| || || ||||| |||| | Sbjct 300162 CAGAACGGCGACTGGTCGCTCATGTGCCCCAACGAGTGCCCTGGTCTGGCCGACTGCTAC 300103 Query 364045 GGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAG--- 364101 |||||||| | || || ||||| || || | ||||| ||||| ||| Sbjct 300102 GGTGACGAGTTTGAGCGCCTCTACGAGCGCTACGAGGCCGAGGG--TCGCTCG-AAGCGC 300046 Query 364102 ACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACA 364161 || | || |||||||| |||| |||||| | || || |||| ||||| || | | Sbjct 300045 ACCGTCAAAGCGCAGAAGCTCTGGTACGCCATCCTCGAGTCACAGACCGAGACGGGCA-A 299987 Query 364162 CCCTAT-ATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTAC 364220 |||| | || ||||||| || | |||||||||| ||||||| || |||| || || Sbjct 299986 CCCTTTCATCCTGTACAAGGACGCCGCCAACCGCAAGAGCAACCAGAAGAACCTCGGCAC 299927 Query 364221 AATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGC 364280 || || |||| | ||||||||||| || || |||| ||||||||||||| || Sbjct 299926 GATCAAGTGCTCCAACTTGTGTACCGAGATCATCGAGTACAGCGCTCCCGACGAGGTGGC 299867 Query 364281 CGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTT-----------TGTAAAAGATGGT 364329 || || ||||| || |||||||| || || |||| || |||| || Sbjct 299866 AGTGTGCAACCTCGCCTCGATCGCACTGCCCACGTTCATTGACCCAGTGACCAAGA-CGT 299808 Query 364330 ACTTTTGACCACCAGCATCTTTATGACGTAACCTA--TCATGCTACTTGCAATCTCGACA 364387 || ||| ||| ||| | ||| || | ||| || | | || || ||| Sbjct 299807 AC----GACTTTAAGCGTCTGCACAGCGTTGCCAAGGCCAT-CTGCAAG-AACCTGAACA 299754 Query 364388 AGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGC-GTTCTAATATGCGTCAT 364446 || | ||||||| || || ||||| || | || || || || || |||||||| Sbjct 299753 AGATCATCGACATTAACTACTATCC-GGTCGAGGAGGCGCGCAAGTCCAACATGCGTCAC 299695 Query 364447 CGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCA 364506 || ||||| || | ||||| |||||||| || || | || ||||| | | || Sbjct 299694 CGTCCGATCGGGATCGGTGTTCAGGGCCTTGCGGATGCGTTCATGATCATGGGGTATGCG 299635 Query 364507 TTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCC 364566 ||||| ||| | || ||||| || || | |||||||||| || || || ||| Sbjct 299634 TTTGAGTCGGCCGAGGCTCGGCGACTGAACGTGCAGATCTTTGAGACCATCTACCACGCC 299575 Query 364567 GCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGG 364626 ||| || ||||| || |||| | | || | ||| || || | || Sbjct 299574 GCACTGGAGCGATCGTGCGAGCTGGCTGAGCAGCACGGCAGCTACGAGACGTACGCCGGC 299515 Query 364627 TCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGA 364686 || || ||||||||| | || |||| || | ||| |||||||| || | || Sbjct 299514 TCGCCCGCTTCGCAGGGTGAGTTGCAGTACGACATGTGGGGGGTCACGCCGTCGGACCTG 299455 Query 364687 TGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTT 364746 ||| |||||| ||| |||| | ||||| || ||||||||| || | Sbjct 299454 TGGGACTGGGCGGAGCTCAAGGCCAAGATCGCCAAGCACGGGCTTCGCAACTCGCTGCTG 299395 Query 364747 ACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAA 364806 || || ||||| || ||||| || |||||||| || |||||||||||||| Sbjct 299394 CTGGCACCGATGCCGACCGCTTCGACGAGTCAGATCCTGGGCTTTAACGAGTGCTTCGAG 299335 Query 364807 CCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAAT 364866 || | ||| ||| | || || || || || || | || || || | ||| || || Sbjct 299334 CCTTATACGTCCAACATCTACTCTCGGCGTGTGCTCGCGGGTGAGTTCCAGGTGGTGAAC 299275 Query 364867 AAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTAT 364926 || | | || || || | || |||||| |||| ||||||||| | Sbjct 299274 CCGTGGTTGTTGCGCGAGCTGGTGGAGCAGGGCCTGTGGAACGACACGATGAAGAACCGT 299215 Query 364927 ATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGA--AGATC-TGAAG 364983 |||||||| || || | |||||| | ||||| |||| || ||| |||| Sbjct 299214 ATCATCGCGCACGGCGGATCGATCCAGAACGTGCCAGGCATTCCTGACCGCATCAAGAAG 299155 Query 364984 CCTATTTACAAAACCGTATGGGAAAT-TTCCATGCGAA--CTCTCATTGATATGGCGGCC 365040 | | ||||| || || ||||| || ||| ||| | |||| || ||||| || Sbjct 299154 C---TGTACAAGACGGTCTGGGAGATCAGCCA---GAAGGCGATCATCGACATGGCTGCG 299101 Query 365041 GATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAG--CCAA 365098 || || || || |||||||| ||| |||||| | ||| ||||| || | || | Sbjct 299100 GACCGAGGAGCGTTTATCTGCCAGTCGCAGTCGCTCAAC--ATTCACCTTTCGGCACCGA 299043 Query 365099 CCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGGT 365157 | | | |||| || || ||||| || ||||| |||||| || || ||||| ||| Sbjct 299042 CGTTTGGACAGCTCACCTCGATGCACTTTTACGGCTGGAAAAAGGGACTCAAGACGGGT 298984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303352664843792