Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001599495.1_202016-03-01] 56 sequences; 19,606,871 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq21 250 2e-61 seq29 138 1e-27 seq10 116 3e-21 seq4 98.7 9e-16 >seq21 Length=360673 Score = 250 bits (276), Expect = 2e-61 Identities = 992/1522 (65%), Gaps = 67/1522 (4%) Strand=Plus/Plus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 || || ||||| ||||| || || | |||||| || | || | ||| ||||| | || Sbjct 299276 TTCACCACCTGGAACTCACCCGCGAGCACACGCCGAGAGTAGATGTTGGACGTATAAGGC 299335 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || || |||||||| ||||||||| ||| |||| ||||| ||||| |||| | Sbjct 299336 TCGAAGCACTCGTTAAAGCCCAGGATCTGACTCGTCGAAGCGGTCGGCATCGGTGCCAGC 299395 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | | || ||||| || |||||||| ||| | |||| ||| |||| ||||| Sbjct 299396 AGCAGCGAGTTGCGAAGCCCGTGCTTGGCGATCTTGGCCTTGAGCTCCGCCCAGTCCCAC 299455 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTC----GCTGGCGGG 145293 || | |||| | || ||||||||||||||||||| |||| || |||| | Sbjct 299456 AGGTCCGACGGCGTGACCCCCCACATGTCGTACTGCAACTCACCCTGCGAAGCGGGCGAG 299515 Query 145294 GCTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTG----GCGAGCTCGCAAC-TCGCC 145348 | || | | | ||| ||||| || || || |||||||| |||| Sbjct 299516 CCGGCGT----ACGTCTCGTAGCTGCC----GTGCTGCTCAGCCAGCTCGCACGATCGC- 299566 Query 145349 TCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCG 145408 ||||| ||| || || || ||||| || ||| ||| || || || || | Sbjct 299567 TCCAGTGCGGCGTGGTAGATGGTCTCAAAGATCTGCACGTTCAGTCGCCGAGCCTCGGCC 299626 Query 145409 CTCTCGTACGGCATGCGC-AGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCC 145467 ||| ||| ||| | | | | | || ||||| || || ||||| | || | || Sbjct 299627 GACTCAAACG-CATACCCCATGATCATGAACGCATCCGCAAGGCCCTGAACACCGATCCC 299685 Query 145468 GATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTC 145527 ||| || || || ||||||| | | | |||| ||||| ||||| ||| ||| Sbjct 299686 GATCGGACGGTGACGCATGTTGGACTTGCGCGCCTCCTCGACCGGATAGTAGTTAATGTC 299745 Query 145528 GATAATTTTATTCAAGTT-TCGCACTACTACCTTTGTAA---TGTGCCGCAACTTTTCAA 145583 ||| || || |||| ||| | ||| | |||| | || ||||| | ||| || Sbjct 299746 GATGATCTTGTTCAGGTTCTTGCAG-ATGGCCTTGGCAACGCTGTGCAGACGCTT---AA 299801 Query 145584 AGTCAAACCGA---GCCTC---GTCAACGACCACACAGCTATTGACGGCGATCGACGCCA 145637 |||| || | | | ||||| || || | | || ||||||| || | Sbjct 299802 AGTCGTACGTCTTGGTCACTGGGTCAATGA--ACGTGGGCAGTG----CGATCGAGGCGA 299855 Query 145638 AATTACAAACTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGC 145697 || || |||||| ||| |||| ||||||| | | |||||||| ||||| ||| Sbjct 299856 GGTTGCACACTGCCACCTCGTCGGGAGCGCTGTACTCGATGATCTCGGTACACAAGTTGG 299915 Query 145698 TACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGA 145757 || ||||| || || || || | ||| || || || | |||| ||||||||||| | Sbjct 299916 AGCACTTGATCGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACA 299975 Query 145758 GCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCA-AG-TCCTG 145815 | ||| | || ||| ||||| ||| | ||| | ||| || || || | ||| Sbjct 299976 GGATGAAAGGGTTGCCCGTCTCGGTCTGTGACTCGAGGATGG--CGTACCAGAGCTTCTG 300033 Query 145816 CGCACGCACC-TGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAA 145874 ||| || ||| ||| |||| ||||| | ||||| | |||||| ||||| Sbjct 300034 CGCTTTGACGGTGC-GCTTCGAGCGACCCTCGGCCTCGTAGCGCTCGTAGAGGCGCTCAA 300092 Query 145875 ACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATA 145934 || || ||||||||| |||| ||| || || |||| |||||| ||||| |||||||| Sbjct 300093 ACTCGTCACCGTAGCAGTCGGCCAGACCAGGGCACTCGTTGGGGCACATGAGCGACCAGT 300152 Query 145935 CGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGT 145994 ||||||| | ||| | || ||| || | ||| |||||||| || || || | | | Sbjct 300153 CGCCGTTCTGCTCGACCCTCTTCATGAAGAGATCAGGCACCCAGAGTGCATAGAAGAGCT 300212 Query 145995 CGCGCGCTTTGCAA-TCCTCAGCACCCATGTT-TCGCTTCAAATTAAGCACACT-ATAGA 146051 | ||||| ||| ||||| || ||| | || || | || | ||| | ||| Sbjct 300213 CACGCGCAC-GCACCTCCTCCTTTCCGTGGTTCTTGCG-CAGGTCGAGGA-ACTCAAAGA 300269 Query 146052 TGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTTG---CCACCCT 146108 ||||| |||||| |||||||| || | || | ||| || || ||| ||||||| Sbjct 300270 CGTCCGAGTGCCATGGTTCAATGTAAATAGCAAAGGCACCGGGACGCTTGTTGCCACCCT 300329 Query 146109 GGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTA 146168 |||| |||| || | ||||||| |||||||| | ||||||| | | |||| || | Sbjct 300330 GGTCGACGTAGCGCGCAGTGTTGTTGAAGACGCGGAGCATGGGCACAATGCCGTTGCTGA 300389 Query 146169 CGCCGTTCGTAGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGA 146228 | ||||| || | || | |||| | || | |||||| | || | ||||| Sbjct 300390 CACCGTTGGTGCCGGCAATGTACGAGCCGGTGCCACGGATGCAATGGATGTTGAGGCCGA 300449 Query 146229 GACCGCCG-CCGTACTTGGATATAGCGGCGCA-GTCGCCGAGCGTCTCGTAGATGCCGTC 146286 || ||| |||| |||||| || ||| || ||| ||| || |||||||||||||| Sbjct 300450 TGCCACCGGCCGT-CTTGGAGATCATGGCACAAGTCTT-GAGGGTATCGTAGATGCCGTC 300507 Query 146287 AAT---GCTATCGCTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGT 146343 || | ||| |||| ||| | || |||||||| | | ||||| ||| || Sbjct 300508 GATCGAGTCATC-CTTC--ATGGTAACAAGGAAGCACGACGAGAGCTGCGGGTGCGGGGT 300564 Query 146344 CCCCGCCGAGAACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATCATCCGATA 146403 || || ||| | ||| || ||||| ||||| ||| | ||| | || Sbjct 300565 ACCGGCGTTGAAGAGCGTAGGCGAGGCGTGGGTAAAGTACTTTTGCGACATAAGGTTGTA 300624 Query 146404 CGTTTCGATAGCG-TCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCA 146462 ||| ||||| ||| ||| || |||| | ||| || ||||| | |||||| |||||||||| Sbjct 300625 CGTCTCGATGGCGCTCTCGA-TGTCCTGGCCGTGGATGCCGACAGCGACTCGCATGAGCA 300683 Query 146463 TGTGTTGGGGCCGCTCCGCCACTTGATTGTCAATCTTTAACAAATAGCCGTTCTCCAGGG 146522 |||| ||||| ||||| || || | || || | ||||||| ||| || | Sbjct 300684 TGTGCTGGGGACGCTCTGCGACCTTGCCGTTGATGCGGAGCAAATAGGAACGCTCGAGCG 300743 Query 146523 TTTTGTATCCGAAAAATTTGTA 146544 | ||| | |||||||| ||||| Sbjct 300744 TCTTGAAGCCGAAAAAGTTGTA 300765 >seq29 Length=43685 Score = 138 bits (152), Expect = 1e-27 Identities = 330/488 (68%), Gaps = 17/488 (3%) Strand=Plus/Minus Query 46100 AGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCGACTTTCGCCGAGCGTA 46159 |||| |||||||||| | ||||||| | || || ||||||||||||||| Sbjct 30192 AGAAGGCCGACTGGGCTCTTCGATGGATCAGCGACAAGCGTGCCACTTTCGCCGAGCGTC 30133 Query 46160 TGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCATCTTTT 46219 |||| || ||||| || |||||| ||||||| || ||| || ||| | ||||| | Sbjct 30132 TGGTCGCGTTTGCCGCCGTCGAGGGCATCTTTTTCTCGGGCTCATTCGCCTCGATCTTCT 30073 Query 46220 ACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCGC 46278 |||| || | || | |||||||||| || ||||| ||||||||| || ||||| Sbjct 30072 GGCTCAAGAAGCGCGGTC-TCATGCCCGGTCTCACGTTCTCCAACGAGCTCATCTCGCGT 30014 Query 46279 GACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACACTCGCGTGCACGACAAG 46338 |||||||| || || ||||||||||| || || || || | | | || || | Sbjct 30013 GACGAGGGTCTTCACACGGACTTTGCCTGCCTTCTCT---TCAGCCACCT-CAGGAGGCG 29958 Query 46339 CTTGCGCCC-GACACCGTGCTGAGCATGTTCAAGGAGGCGGTGGCCATTGAGAAGGAGTT 46397 | || ||| ||||| ||||| | || ||| ||||| |||| |||||||||| ||| Sbjct 29957 CGCGCACCCAGACACGGTGCTCAAGATCATCACTGAGGCCGTGGAAATTGAGAAGGCGTT 29898 Query 46398 TTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAAC-GCACAGTCAATGTGCGACT 46456 | | || | |||| || || | || |||||| ||| || |||||| | | Sbjct 29897 CCTGTGCGAATCAATCCCCGTCGCGCTCATCGGTATGAACAGCA-AGCTCATGTGCCAAT 29839 Query 46457 ACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCACCAGCCGAAGCATTTTCACG 46516 |||| |||| ||| || || || |||| || ||| | || ||| | ||| Sbjct 29838 ACATTGAGTATGTCGCCGATCGCTTGCTGGTATCGCTCGGAAACCCAGTGCACT---ACG 29782 Query 46517 CGCGCAA----TCCATTTGAGTTTATGAACAACATCTCCCTGGAGGGCAAAACTAATTTT 46572 || | | ||| ||||| ||||||| |||||| || |||| ||||| || || || Sbjct 29781 -GCTCCACATGTCCGTTTGACTTTATGACCAACATTTCGTTGGAAGGCAAGACCAACTTC 29723 Query 46573 TTCGAAAA 46580 || || || Sbjct 29722 TTTGAGAA 29715 >seq10 Length=589446 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | |||| || | || | |||||||| || ||||||||||| ||| Sbjct 214691 CCACCGCGGAGTCGCAATACAAGGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCGGAG 214632 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||| || |||||||| || ||| |||| | ||||||||| || ||||| Sbjct 214631 AGCGTTCGGCCGTCTTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCAGGAGGA 214572 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||||| | || | || || | |||||||| Sbjct 214571 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTCGACT 214512 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| |||| ||| || || || || || || || ||||||||||| Sbjct 214511 TCGAGAGTAATGGTCTTGCCCGTGAGCGTCTTAACAAAAATCTGCAT 214465 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| ||||| || || | ||| |||||||| || |||||||| || Sbjct 294529 CCACCACGCAGACGAAGCACCAAGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAA 294588 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| |||||||| || ||| |||| | |||||||||||| || || Sbjct 294589 AGCGTACGTCCGTCCTCGAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGCGGA 294648 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || || | ||||| | Sbjct 294649 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCCACC 294708 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | ||| ||||| || || || || || || |||||||| Sbjct 294709 TCGAGAGTGATGGTCTTACCCGTGAGGGTCTTGACAAAGATCTGCAT 294755 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || || | ||| || || || || | || || ||||| ||||||||||| || Sbjct 214920 GCCTCCACGAAGACGAAGGACCAAGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCCGA 214861 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| || || ||||||||||| || |||| | ||||||||| || ||||| Sbjct 214860 CAGAGTGCGACCATCTTCGAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGATCAGGAGG 214801 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||| || ||||| | || | || || | ||||||| Sbjct 214800 AATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGAC 214741 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | ||| || || || || || || || || |||||||| Sbjct 214740 TTCGAGAGTGATGGTCTTGCCTGTGAGCGTCTTGACAAAGATCTGCAT 214693 >seq4 Length=1388522 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| ||||| | || | |||||| ||||| || |||||||| || Sbjct 1196039 CCACCACGCAGACGGAGCACAAGGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCCGAG 1195980 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| |||||||| || ||| |||| | ||||||||||| || || Sbjct 1195979 AGGGTGCGGCCATCCTCGAGCTGCTTACCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGA 1195920 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||||| | || | || || | |||||| | Sbjct 1195919 ATACCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCCACC 1195860 Query 131188 TCGACGGTAACGGTTTTACCGGTT 131211 || | ||||| ||| ||||| ||| Sbjct 1195859 TCAAGGGTAATGGTCTTACCTGTT 1195836 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || || | |||| ||| | || | ||||||||||| || |||||||| || Sbjct 153933 GCCGCCACGGAGTCGCAACACAAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAGTCCGA 153992 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||||| ||| || |||||||| || || |||| | |||||||||||| || || Sbjct 153993 GAGCGTGCGGCCGTCTTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGGGG 154052 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| ||| || ||||| | || | || |||| ||||| | Sbjct 154053 GATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATTGTGTCGGAAGACTCCAC 154112 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTT 131219 || | ||| | || || ||||| ||||| || Sbjct 154113 CTCAAGGGTGATCGTCTTGCCGGTCAGAGTCTT 154145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012469591040