Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001599495.1_202016-03-01] 56 sequences; 19,606,871 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq15 138 8e-28 >seq15 Length=564803 Score = 138 bits (152), Expect = 8e-28 Identities = 213/304 (70%), Gaps = 0/304 (0%) Strand=Plus/Minus Query 6187 ATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTA 6246 |||| | ||| ||||||||| ||| ||||| | || ||||| ||||||| | Sbjct 189171 ATGTCGACGACAAGTTCTACCGTTACCGCATGCCCCTGCTCCAGACCAAGATCGAGGGCA 189112 Query 6247 AGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGAC 6306 |||| |||||||| || |||||||| ||||||| |||| | ||| | ||| | | Sbjct 189111 AGGGCAACGGTATCAAGACCGTCATCCCCAACATGTCTGACATTGCTCGTTCCCTCAGCC 189052 Query 6307 GCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTG 6366 | ||| ||||||||||||| || | |||||| ||||| || ||||| || || ||||| Sbjct 189051 GTCCTCCCACCTACCCGACCAAGTTTTTCGGCTGCGAGCTCGGCGCCCAAACCTCGTTTG 188992 Query 6367 ATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACT 6426 | | || ||||| || | ||| || ||||| | || | | | | || | || Sbjct 188991 ACGAGAAGAACGATCGTTACATTGTCAACGGTGCCCACGATGCCGACCGTCTTCGCGAGC 188932 Query 6427 TACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCG 6486 | ||||||||||| || ||||||||| || || | || ||| | ||||| || |||| Sbjct 188931 TGCTTGACGGCTTCATCGACAAGTTTGTCCTCTGCGGCGACTGCAAGAACCCCGAAACCG 188872 Query 6487 AGCT 6490 | || Sbjct 188871 ATCT 188868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334946971398536