Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001599495.1_202016-03-01] 56 sequences; 19,606,871 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq10 188 1e-42 seq4 127 4e-24 seq21 102 2e-16 seq9 98.7 2e-15 >seq10 Length=589446 Score = 188 bits (208), Expect = 1e-42 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || |||||||| | ||| ||||| |||||||| || ||||| || |||||| Sbjct 214691 CCACCGCGGAGTCGCAATACAAGGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCGGAG 214632 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | |||||| || ||||| ||||| | || || || || ||| Sbjct 214631 AGCGTTCGGCCGTCTTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCAGGAGGA 214572 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| || ||||| ||||||||| ||||||||||| | || || ||| Sbjct 214571 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTCGACT 214512 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || ||||| || |||||||| ||||| || || |||||||| Sbjct 214511 TCGAGAGTAATGGTCTTGCCCGTGAGCGTCTTAACAAAAATCTGCAT 214465 Score = 179 bits (198), Expect = 7e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| ||||| || | |||||||| || ||||| || || || ||||| || || || Sbjct 214919 CCTCCACGAAGACGAAGGACCAAGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCCGAC 214860 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| ||||| || || || | || || || || ||| Sbjct 214859 AGAGTGCGACCATCTTCGAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGATCAGGAGGA 214800 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||||||||| ||||| ||||||||| ||||||||||| | || || ||| Sbjct 214799 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACT 214740 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || || ||||| |||||||| || |||||||| Sbjct 214739 TCGAGAGTGATGGTCTTGCCTGTGAGCGTCTTGACAAAGATCTGCAT 214693 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || || ||||| || |||||||| || || || Sbjct 294529 CCACCACGCAGACGAAGCACCAAGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAA 294588 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || ||||| || || | || |||||||| ||| Sbjct 294589 AGCGTACGTCCGTCCTCGAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGCGGA 294648 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| |||||||| ||||||||||| | || || || Sbjct 294649 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCCACC 294708 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || ||||||||||||||||| || |||||||| Sbjct 294709 TCGAGAGTGATGGTCTTACCCGTGAGGGTCTTGACAAAGATCTGCAT 294755 >seq4 Length=1388522 Score = 127 bits (140), Expect = 4e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | || | ||| || || || || || |||||||| || || ||| Sbjct 1196039 CCACCACGCAGACGGAGCACAAGGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCCGAG 1195980 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| || || | || |||||||| ||| Sbjct 1195979 AGGGTGCGGCCATCCTCGAGCTGCTTACCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGA 1195920 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||| |||||||| ||||||||||| | || || || Sbjct 1195919 ATACCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCCACC 1195860 Query 68415 TCCAAGGTGATGGTTTTTCCCGT 68437 || | ||| ||||| || || || Sbjct 1195859 TCAAGGGTAATGGTCTTACCTGT 1195837 >seq21 Length=360673 Score = 102 bits (112), Expect = 2e-16 Identities = 218/326 (67%), Gaps = 0/326 (0%) Strand=Plus/Plus Query 31701 CACACCGCCGTTTCGTCCGTAGAAGTGTATTCGACAATCTCGGCACAAAGATTGCTGCCC 31760 ||||| ||| ||||| | || |||| |||| ||||||| ||| | ||| || | Sbjct 299861 CACACTGCCACCTCGTCGGGAGCGCTGTACTCGATGATCTCGGTACACAAGTTGGAGCAC 299920 Query 31761 GTGATGGTGCCGGCATTGGACTGCATGTTCTTCACGTTCACGCTGTCCTTGTTGAGCACG 31820 |||| |||||| || ||| || |||| ||| || |||||||| || | | Sbjct 299921 TTGATCGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACAGGATG 299980 Query 31821 TAAGGCATGCCCGTCTCGATCTGCGTGATGATCATCGCATTCCAGACATCGCGCGCTTTG 31880 |||| ||||||||||| |||| | || || || | ||||| | |||||||| Sbjct 299981 AAAGGGTTGCCCGTCTCGGTCTGTGACTCGAGGATGGCGTACCAGAGCTTCTGCGCTTTG 300040 Query 31881 ACGACTTTCTTCGCACGCCCCTCGGACTCGTAGCGAAGATACAGGTCCTCGTACTCCTTG 31940 ||| ||||| || ||||||| ||||||||| || ||| ||| |||| | Sbjct 300041 ACGGTGCGCTTCGAGCGACCCTCGGCCTCGTAGCGCTCGTAGAGGCGCTCAAACTCGTCA 300100 Query 31941 CCAAAGGCATCGGTTAGACCGGGACACTCCTTGGGGTCGAAGAGCGACCATGCGACATCG 32000 || || |||| ||||| || ||||| |||||| | ||||||||| || | | Sbjct 300101 CCGTAGCAGTCGGCCAGACCAGGGCACTCGTTGGGGCACATGAGCGACCAGTCGCCGTTC 300160 Query 32001 GCCTCTACTCGCTTCATGAACAGGTC 32026 ||| || | ||||||||| || || Sbjct 300161 TGCTCGACCCTCTTCATGAAGAGATC 300186 >seq9 Length=646444 Score = 98.7 bits (108), Expect = 2e-15 Identities = 359/549 (65%), Gaps = 26/549 (5%) Strand=Plus/Minus Query 225458 GAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAGGTGCGTGA-TGAG 225516 |||||||| ||||||||||||| | | || | ||| ||||| || | ||| Sbjct 177655 GAGTCGTGCGACACAATGATGGCGGTGGCAGTCTTGAGGTTGACGAGGTA-GTCAGTGAT 177597 Query 225517 CCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGTCAGC 225576 ||| |||||| ||||||| |||||| ||||| || || || |||| ||||| || Sbjct 177596 CCACTTGACGTTGACAACGTCCAAGTGGTTGGTAGGCTCATCGAGCAGCAAAATGTCGGC 177537 Query 225577 ATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAGGGAGCC 225636 | | |||||||| || | || | | |||||| ||||| || || || || | | Sbjct 177536 CTTGAACAGGATGGCACGGGCAAGGGCGACCTTCATCTTCCAACCACCAGAGAGACCGGC 177477 Query 225637 GATTGAAACAGAGTGCTTA---GCTTCGTCAAAGCCGTACTCCAGGAGCGTCTGGATAAT 225693 ||| | |||| || | || ||||| |||||| ||| |||| || || | Sbjct 177476 GATGGGC---GAGTTCTGACGGGCATCGTCGAAGCCGACCTCGTGGAGGGTAGCGACA-- 177422 Query 225694 GCGCTCGGGAGAGCTGCGAGCGGCAACGTTGGGGTCGGACGAGAGGTAA--TCATATACG 225751 || |||| | | | || | ||| | | |||| | || | ||| || || Sbjct 177421 GC-CTCGTCGCGGGT-CATGCTGAGACGCTCG--TCGG-CAAG-GATAAACTCGAGAACA 177368 Query 225752 GTCATGTCCGAGAC----AGACGCGTCAATGTCGTGGTCCACGTACACCGTCCGGAGCTG 225807 |||||| |||| ||| |||| | |||||| ||||||||| || |||| || Sbjct 177367 GTCATG----AGACCCTCAGAGCCGTCCAAGTCGTGCTCCACGTACCAGGTTCGGACCTC 177312 Query 225808 AGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGTACTCTT 225867 | | |||||||| || | |||||| || | || || || | |||||| ||| Sbjct 177311 ATCGGGCGAAGGGAAGCCTTCGACCTGGCCGTTGGTGATGGCGCGCATGAGGGTAGACTT 177252 Query 225868 GCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAGGCGCGT 225927 || | ||||| ||||| ||| ||||| | | || ||||||| | ||| | Sbjct 177251 TCCGGAACCGTTACGACCGCAGAGACCGTACTTGTGACCACGCTTGAGGCGGAGAGTGGC 177192 Query 225928 GGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACAGGTCCTC 225987 | ||| || || || ||| |||| ||||| || ||||||| || | ||| ||||| || Sbjct 177191 AGTGTTGAGCAGAATTTTGGCACCGTAGGCGAGCGAGAACTGACAGTTGCAGAGGTCTTC 177132 Query 225988 ACCCTCCTC 225996 ||||||||| Sbjct 177131 ACCCTCCTC 177123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921621754864320