Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001599495.1_202016-03-01] 56 sequences; 19,606,871 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq21 176 5e-39 seq29 116 4e-21 >seq21 Length=360673 Score = 176 bits (194), Expect = 5e-39 Identities = 913/1431 (64%), Gaps = 53/1431 (4%) Strand=Plus/Plus Query 113915 AACTCACCCGCGAGGGTGCGTCTCAGA-TAGATATTGGTCGTGTATGGCTCAAAGCACTC 113973 |||||||||||||| || | ||| ||||| |||| ||| || ||||| |||||||| Sbjct 299288 AACTCACCCGCGAGCACACGCCG-AGAGTAGATGTTGGACGTATAAGGCTCGAAGCACTC 299346 Query 113974 ATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 114033 || |||| ||| || || || || || ||||| ||||||| || || ||| Sbjct 299347 GTTAAAGCCCAGGATCTGACTCGTCGAAGCGGTCGGCATCGGTGCCAGCAGCAGCGAGTT 299406 Query 114034 ACGGAGACC---CTTTTCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTA---GTTGAG 114087 || || || ||| | | || ||||||| | ||||||| | || Sbjct 299407 GCGAAGCCCGTGCTTGGCGATCTTGG---CCTTGAGCTCCGCCCAGTCCCACAGGTCCGA 299463 Query 114088 CTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTC 114147 | || ||||| ||||| || |||| | ||| || || || ||||| || | Sbjct 299464 CGGCGTGACCCCC---CACATGTCGTACTGCAACTCACCCTGCGAAGCGGGCGAGCCGGC 299520 Query 114148 AAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGA-GCTCGCCTCGAGGGCTGCGT 114206 | |||||||| ||| | ||| |||| ||| | | |||| || || || |||| Sbjct 299521 GTACGTCTCGTAGCTGCCGTGCTGCTCAGCCAGCTCGCACGATCGC-TCCAGTGCGGCGT 299579 Query 114207 GATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGA 114266 | || || |||||||| || | | |||| | | |||||| | || |||||||| | Sbjct 299580 GGTAGATGGTCTCAAAGATCTGCACGTTCAGTCGCCGAGCCTCGGCCGACTCAAACGC-A 299638 Query 114267 GTCGGCACAAA-ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGT 114325 | || | || || ||||||| || || || ||||||| || || || || || Sbjct 299639 TACCCCATGATCATGAACGCATCCGCAAGGCCCTGAACACCGATCCCGATCGGACGGTGA 299698 Query 114326 CTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTT 114385 | ||| || ||||| || || ||| || ||||| | || | ||||| | | | || Sbjct 299699 CGCATGTTGGACTTGCGCGCCTCCTCGACCGGATAGTAGTTAATGTCGATGATCTTGTTC 299758 Query 114386 AGATTTTTGGTGACAACCTTTGTGA---TTTCATGAAGCTTT---TCGTAA-TCAAAACT 114438 || || ||| || |||| | | | | || |||| ||||| || | Sbjct 299759 AGGTTCTTGCAGATGGCCTTGGCAACGCTGTGCAGACGCTTAAAGTCGTACGTCT----T 299814 Query 114439 GCGAGTCTCT---TCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGA 114495 | ||| || ||| ||| || | || || ||||| || || || || ||||| | Sbjct 299815 G---GTCACTGGGTCAATGA---ACGTGGGCAGTGCGATCGAGGCGAGGTTGCACACTGC 299868 Query 114496 GGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGT 114555 ||| || | | ||||||| || || || |||||||| || || | ||| || || Sbjct 299869 CACCTCGTCGGGAGCGCTGTACTCGATGATCTCGGTACACAAGTTGGAGCACTTGATCGT 299928 Query 114556 GCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGT 114615 ||| | |||||| || || ||| ||| || |||||||| || ||| | || | Sbjct 299929 GCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACAGGATGAAAGGGTT 299988 Query 114616 CCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCGGCTGGCACAGTGG 114674 |||||||| || || |||| ||| || || | ||||| | || ||| | | || ||| Sbjct 299989 GCCCGTCTCGGTCTGTGACTCGAGGATGGCGTACCAGAGCTTCTGCGCTTTG-ACGGTGC 300047 Query 114675 CGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGG 114734 || | || ||||| ||||||| ||||||| |||||||| ||||| | Sbjct 300048 GCTTCGAGCGACCCTCGGCCTCGTAGCGCTCGTAGAGGCGCTCAAACTCGTCACCGTAGC 300107 Query 114735 CCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAA 114794 || | || || || || | ||||| | ||| ||||| | || || ||| | Sbjct 300108 AGTCGGCCAGACCAGGGCACTCGTTGGGGCACATGAGCGACCAGTCGCCGTTCTGCTCGA 300167 Query 114795 CACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTT 114854 | | |||||||||||| || || | |||||| || ||||||| || || || | | Sbjct 300168 CCCTCTTCATGAAGAGATCAGGCACCCAGAGTGCATAGAAGAGCTCACGCGCACGCACCT 300227 Query 114855 CTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTT 114914 | || | || || || |||| || | || || | || |||| |||||| |||| Sbjct 300228 CCTCCTTTCCGTGGTTCTTGCGCAGGTCGAGGAACTCAAAGACGTCCGAGTGCCATGGTT 300287 Query 114915 CCAGGTACACCGCGATTGACCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCTG 114971 | | ||| | || | | || ||| ||| |||||| || || | ||| | Sbjct 300288 CAATGTAAATAGCAAAGGCACCGGGACGCTTGTTGCCACCCTGGTCGACGTAGCGCGCAG 300347 Query 114972 TGGCATTAAATACGCGAAGCATTGGAATGATACCAT--CAGATTGGCCATTTGTCCCCCG 115029 || || || ||||| ||||| || | || || | | || || || || || Sbjct 300348 TGTTGTTGAAGACGCGGAGCATGGGCACAATGCCGTTGCTGA--CACCGTTGGTGCCGGC 300405 Query 115030 AA--TACGAGACTTATTGGCTCTGACATCATGGATGTGCATACCAATACCCCCTGCCCAC 115087 || |||||| | || | | || |||||||| | || || || || ||| | Sbjct 300406 AATGTACGAGCC--GGTGCCACGGATGCAATGGATGTTGAGGCCGATGCCACCGGCCGTC 300463 Query 115088 TTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTA 115147 || ||||| || || | |||| | ||||||| ||||||||||||||| |||| Sbjct 300464 TTGGAGATCATGGCACAAGTCTTGAGGGTATCGTAGATGCCGTCGATCGAGTCATCCTTC 300523 Query 115148 TTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTT 115207 | | | ||||||||| ||| | || || || ||||| ||||||||||| || Sbjct 300524 ATGGTAACAAGGAAGCACGACGAGAGCTGCGGGTGCGGGGTACCGGCGTTGAAGAGCGTA 300583 Query 115208 GGTGTCGCGTGGATGAACATAC-CTTGGGACATCTTATCGTAGGTCTCCAAGACGGCGGG 115266 || | |||||| | || ||| ||| ||||| | ||| ||||| | | || Sbjct 300584 GGCGAGGCGTGGGT-AAAGTACTTTTGCGACATAAGGTTGTACGTCTCGATGGCGCTCTC 300642 Query 115267 AATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGG 115317 ||||| | ||||| || |||| | ||| ||||| | ||||| ||||| Sbjct 300643 GATGTCCTGGCCGTGGATGCCGACAGCGACTCGCATGAGCATGTGCTGGGG 300693 >seq29 Length=43685 Score = 116 bits (128), Expect = 4e-21 Identities = 229/333 (69%), Gaps = 8/333 (2%) Strand=Plus/Plus Query 125876 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG-GTT 125934 ||||| | ||| ||||||||||| | |||| || ||||||||||||||| | Sbjct 29817 CGATCGGCGACATACTCAATGTATTGGCACATGAGCTTGCTGTTCATACCGATGAGCGCG 29876 Query 125935 ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGC 125994 || |||| | || | | |||| ||||||||||||||||||| || | ||| Sbjct 29877 ACG-GGGATTGATTCGCACAGGAACGCCTTCTCAATTTCCACGGCCTCAGTGATGATCTT 29935 Query 125995 GTGAATGGTGTCCAC---CCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAA 126051 | | | ||||| | | | || || | | || |||||| |||||| Sbjct 29936 GAGCACCGTGTCTGGGTGCGCGCGCCTCCTGAGGT--GGCT-GAAGAGAAGGCAGGCAAA 29992 Query 126052 CTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCAT 126111 || ||| |||||||||||||| |||||||| || || ||||| || || ||||| Sbjct 29993 GTCCGTGTGAAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAACGTGAGACCGGGCAT 30052 Query 126112 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTC 126171 |||||| |||||||| | |||||| |||| ||||| |||||||| ||||| ||||| Sbjct 30053 GAGACCGCGCTTCTTGAGCCAGAAGATCGAGGCGAATGAGCCCGAGAAAAAGATGCCCTC 30112 Query 126172 CACACACGCGAACGCAAAGAGACGCTCAGCAAA 126204 || || ||||| | |||||||| || || Sbjct 30113 GACGGCGGCAAACGCGACCAGACGCTCGGCGAA 30145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597353181852480