Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001599495.1_202016-03-01] 56 sequences; 19,606,871 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq21 334 8e-87 >seq21 Length=360673 Score = 334 bits (370), Expect = 8e-87 Identities = 1085/1663 (65%), Gaps = 44/1663 (3%) Strand=Plus/Minus Query 93772 GGCAGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGC 93831 |||| ||| | ||||| || || || |||| ||||| ||||| |||| || |||||| Sbjct 300711 GGCAAGGTCGCAGAGCGTCCCCAGCACATGCTCATGCGAGTCGCTGTCGGCATCCACGGC 300652 Query 93832 CACGACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATG 93891 || ||||| || | | | | | || ||| | | ||| | |||| Sbjct 300651 CAGGACATCGAGAGCGCCATCGAGACGTACAACCTTATGTCGCAAAAGTACTTTACCCAC 300592 Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 ||| | || || || |||||||| || |||||| || ||| | || ||||| ||||| Sbjct 300591 GCCTCGCCTACGCTCTTCAACGCCGGTACCCCGCACCCGCAGCTCTCGTCGTGCTTCCTT 300532 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 | || | |||| ||||| ||| ||| || | ||| | ||||||| ||||| | Sbjct 300531 GTTACCATGAAGGATGACTCGATCGACGGCATCTACGATACCCTCAAGACTTGTGCCATG 300472 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||||| || || || || ||||| ||| |||| | | |||| || || || Sbjct 300471 ATCTCCAAGACGGCCGGTGGCATCGGCCTCAACATCCATTGCATCCGTGGCACCGGCTCG 300412 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 ||||| ||| ||||| || | ||||||| | || || |||||||| ||||||||| Sbjct 300411 TACATTGCCGGCACCAACGGTGTCAGCAACGGCATTGTGCCCATGCTCCGCGTCTTCAAC 300352 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 ||| | ||||||||||| ||||||||||| | | | ||| | || || | || Sbjct 300351 AACACTGCGCGCTACGTCGACCAGGGTGGCAACAAGCGTCCCGGTGCCTTTGCTATTTAC 300292 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 | || || |||||| ||||||| | ||| |||||||||| ||||||||||| || Sbjct 300291 ATTGAACCATGGCACTCGGACGTCTTTGAGTTCCTCGACCTGCGCAAGAACCACGGAAAG 300232 Query 94252 GATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 || || | | || | || |||||||| || ||||||||||| || || || ||||| Sbjct 300231 GAGGAGGTGCGTGCGCGTGAGCTCTTCTATGCACTCTGGGTGCCTGATCTCTTCATGAAG 300172 Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCC 94371 | |||||| | ||| || |||| || | || ||||| || || || || ||| || Sbjct 300171 AGGGTCGAGCAGAACGGCGACTGGTCGCTCATGTGCCCCAACGAGTGCCCTGGTCTGGCC 300112 Query 94372 GACGTTTGTGGATCGCG-TTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGG-----C 94425 ||| | || | || ||||| | | || | || ||||| | |||| | Sbjct 300111 GACTGCTACGG-TGACGAGTTTGAGCGCCTCTACGAGCGCTACGAGGCCGAGGGTCGCTC 300053 Query 94426 AAGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTG 94485 | || | | || | | || |||||| ||| | ||| | || |||| Sbjct 300052 GAAGC--GCACCGTCA---AAGCGCAGAAGCTCTGGTACGCCATCCTCGAGTCACAGACC 299998 Query 94486 GAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAG 94545 |||||||| | || | |||| ||| ||||||| | | |||| |||| ||||||| || Sbjct 299997 GAGACGGGCAACCCTTTCATCCTGTACAAGGACGCCGCCAACCGCAAGAGCAACCAGAAG 299938 Query 94546 CACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCG 94605 ||||||| ||||||| |||| || |||| |||||||| ||||||| | |||| Sbjct 299937 AACCTCGGCACGATCAAGTGCTCCAACTTGTGTACCGAGATCATCGAGTACAGCGCTCCC 299878 Query 94606 GACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCC 94665 |||||| | || ||||| ||||| | ||| ||| ||| |||| ||| | || Sbjct 299877 GACGAGGTGGCAGTGTGCAACCTCGCCTCGATCGCACTGCCCACGTTCAT------TG-- 299826 Query 94666 TACACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCG-CGGGAAGG--ATG 94722 || | || ||| ||| || | ||| | || || || | |||| || Sbjct 299825 -ACCCAGTGACCAAGACGTACGA-CTTTA--AGCGTCTGCACAGCGTTGCCAAGGCCATC 299770 Query 94723 GTCTTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAAC 94782 | ||||||||||| | | ||||||| |||| ||| || ||| ||||||| || Sbjct 299769 TGCAAGAACCTGAACAAGATCATCGACATTAACTACTATCCGGTCGAGGAGGCGCGCAAG 299710 Query 94783 TCAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTG 94842 || ||| || || || || ||||| ||||| || ||||| | ||||| ||| | || Sbjct 299709 TCCAACATGCGTCACCGTCCGATCGGGATCGGTGTTCAGGGCCTTGCGGATGCGTTCATG 299650 Query 94843 ATGAT-GCGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGA 94901 || || | || || | | || || | ||| || | | |||| || | || || || Sbjct 299649 ATCATGGGGTATG-CGTTTGAGTCGGCCGAGGCTCGGCGACTGAACGTGCAGATCTTTGA 299591 Query 94902 AAGCATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATC-GGACGGCGGGC 94960 | ||| || ||| || || | | ||| | | ||| | || | | ||||| | Sbjct 299590 GACCATCTACCACGCCGCACTGGAGCGATCGTGCGAGCTGG-CTGAGCAGCACGGCAG-- 299534 Query 94961 CACACGAATCGTTCCGCGGATCGCC--CTTGGAACAGGGCATTTTTCAGTTCGACCTCTG 95018 |||| ||| | ||| ||||| ||| | ||||| || |||| |||| | || Sbjct 299533 -CTACGAGACGTACGCCGGCTCGCCCGCTTCG--CAGGGTGAGTTGCAGTACGACATGTG 299477 Query 95019 GGGTGTGAAGCCCTCGGGTCTGTACGACTGG--GAAGCTCTACGCGCTGATGTTATCAAA 95076 ||| || | ||| |||| |||| |||||| | ||||| | || || | ||| Sbjct 299476 GGGGGTCACGCCGTCGGACCTGTGGGACTGGGCGGAGCTCAAGGCCAAGA--TCGCCAAG 299419 Query 95077 CACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATC 95136 ||||| | ||| ||||||| |||| || ||||| || || || ||| |||||| Sbjct 299418 CACGGGCTTCGCAACTCGCTGCTGCTGGCACCGATGCCGACCGCTTCGACGAGTCAGATC 299359 Query 95137 CTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTC 95196 || ||| ||||||| ||||| || | || |||||| | ||| |||| |||||| Sbjct 299358 CTGGGCTTTAACGAGTGCTTCGAGCCTTATACGTCCAACATCTACTCTCGGCGTGTGCTC 299299 Query 95197 GCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTG 95256 || || || |||| || | ||| | | | || || ||| | | ||| || Sbjct 299298 GCGGGTGAGTTCCAGGTGGTGAACCCGTGGTTGTTGCGCGAGCTGGTGGAGCAGGGCCTG 299239 Query 95257 TGGGGTGACAAGGTCAAGAACCAACTGCTACGCGC-CAACGGCTCCGTCCAGAACATCCC 95315 ||| |||| | | ||||||| | | ||||| | ||| || |||||||| | || Sbjct 299238 TGGAACGACACGATGAAGAACCGTAT-CATCGCGCACGGCGGATCGATCCAGAACGTGCC 299180 Query 95316 GCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGCGT 95375 || || || ||||||| ||| |||||||| || ||||||||| ||| | Sbjct 299179 AGGCATTCCTGACCGCATCAAGAAGCTGTACAAGACGGTCTGGGAGATCAGCCAGAAGGC 299120 Query 95376 GATACTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAG 95418 ||| ||||| || || | ||| || | || ||||||||| Sbjct 299119 GATCATCGACATGGCTGCGGACCGAGGAGCGTTTATCTGCCAG 299077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494722853693760