Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001599495.1_202016-03-01] 56 sequences; 19,606,871 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq21 259 5e-64 seq29 156 4e-33 seq10 111 2e-19 seq4 89.7 5e-13 >seq21 Length=360673 Score = 259 bits (286), Expect = 5e-64 Identities = 1066/1636 (65%), Gaps = 55/1636 (3%) Strand=Plus/Plus Query 152850 CGGTCGGCCGCCATCTCAATCAT-GCGTTTTGCCTTCATCTCCCAGGCGGTTTTGTACAA 152908 ||||| || ||||| || || || || || || || ||||||||| | || ||||||| Sbjct 299096 CGGTCCGCAGCCATGTCGATGATCGCCTTCTGGCTG-ATCTCCCAGACCGTCTTGTACAG 299154 Query 152909 ATTTTTAACGCTATCCGGTATACCTTCAATGTTCTGAATAGAGCCCTTGTGTGCAAAAAT 152968 || || | || || || || ||| | |||||| || || || ||| || | || Sbjct 299155 CTTCTTGATGCGGTCAGGAATGCCTGGCACGTTCTGGATCGATCCGCCGTGCGCGATGAT 299214 Query 152969 AGCGTTTCGTATTTCGGGCGTGT-ACACGTTCAGTTTAATGAGGTCATCGATCAAGTACT 153027 | || ||| | | | ||| ||| | | | | | || || | ||| || Sbjct 299215 A-CGGTTCTTCATCGTGTCGTTCCACAGGCCCTGCTCCACCAGCTCGCGCAACAACCACG 299273 Query 153028 GGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAG 153087 |||| ||||| || ||||| ||||| | ||| || | | || | ||| || ||| Sbjct 299274 GGTTCACCACCTGGAACTCACCCGCGAGCACACGCCGAGAGTAGATGTTGGACGTATAAG 299333 Query 153088 GTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCA 153147 | || ||| | |||||| ||| || || ||| ||| | ||||||||||| |||| Sbjct 299334 GCTCGAAGCACTCGTTAAAGCCCAGGATCTGACTCGTCGAAGCGGTCGGCATCGGTGCCA 299393 Query 153148 CCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTGCCAATCCC 153207 || || || || || | |||||| || | | |||| | | || ||| |||| Sbjct 299394 GCAGCAGCGAGTTGCGAAGCCCGTGCTTGGCGATCTTGGCCTTGAGCTCCGCCCAGTCCC 299453 Query 153208 ACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACTGGCGGGAC 153267 |||| ||||||| || | ||||||||||||||| ||| | || | ||||| Sbjct 299454 ACAGGTCCGACGGCGTGACCCCCCACATGTCGTACTGCAACTCACCCTGCGAAGCGGGCG 299513 Query 153268 TGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGC-CTCGAGC 153326 |||||| |||| ||||||||||| | | ||||| ||||| | | | ||| || Sbjct 299514 AGCCGGCGTACGTCTCGTAGCTGCCGTGCTGCTCAGCCAGCTCGCA-CGATCGCTCCAGT 299572 Query 153327 GCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCC-GCTTCTTCGCTCTC 153385 ||| | | ||| ||||| || ||| || || || || | || || | ||| Sbjct 299573 GCGGCGTGGTAGATGGTCTCAAAGATCTGCACGTTCAGT-CGCCGAGCCTCGGCCGACTC 299631 Query 153386 GTACGGCATGCGC-AGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGG 153444 ||| ||| | | | | || || || || || || ||||| | ||||| ||||| | Sbjct 299632 AAACG-CATACCCCATGATCATGAACGCATCCGCAAGGCCCTGAACACCGATCCCGATCG 299690 Query 153445 GTCGATGCTTCTCGTTG--CT---GCGCCTCGCGCTCGCTATGGGATAGTGATTGCGATC 153499 | || || | |||| || ||||||| |||| | ||||||| || || Sbjct 299691 GACGGTGACGCATGTTGGACTTGCGCGCCTC---CTCG--ACCGGATAGTAGTTAATGTC 299745 Query 153500 GATAATTTTGTTGAGGTTGC-GCACCACCACTTTAGTTATCGCCTTA-AGTTTCTCGAAA 153557 ||| || ||||| ||||| ||| ||| | | ||| | || || || Sbjct 299746 GATGATCTTGTTCAGGTTCTTGCAGATGGCCTT--GGCAACGCTGTGCAGACGCTTAAAG 299803 Query 153558 TCATAGGTCATTTCGTCGACGCGT--ACGCATCGATTCACGGCAATAGACGCCAGATTAC 153615 || || ||| || ||| | || | | | || || || || || || || | Sbjct 299804 TCGTACGTC--TTGGTCACTGGGTCAATGAACGTGGGCAGTGCGATCGAGGCGAGGTTGC 299861 Query 153616 AGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATT 153675 | || ||| ||| |||| ||||||||| | |||||||| || | |||| ||| | Sbjct 299862 ACACTGCCACCTCGTCGGGAGCGCTGTACTCGATGATCTCGGTACACAAGTTGGAGCACT 299921 Query 153676 TTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGT 153735 | || ||| | || | ||| ||||| ||||| ||| ||||| ||| | || ||| Sbjct 299922 TGATCGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACAGGATGA 299981 Query 153736 ACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAAACCTATGC-AGGTCCTGCGCTCGC 153794 | || ||| |||||| || | |||| ||| | || || | ||||||| Sbjct 299982 AAGGGTTGCCCGTCTCGGTCTGTGACTCGAGGATGG-CGTACCAGAGCTTCTGCGCTTTG 300040 Query 153795 ACCCGCTGCCGAT--AGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGT 153852 || | ||| | |||| |||||| |||||| |||||||| || ||||||||||||| Sbjct 300041 AC--GGTGCGCTTCGAGCGACCCTCGGCCTCGTAGCGCTCGTAGAGGCGCTCAAACTCGT 300098 Query 153853 CGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGT 153912 | |||||||||||||| || || || |||| | || ||||| |||||||| ||| Sbjct 300099 CACCGTAGCAGTCGGCCAGACCAGGGCACTCGTTGGGGCACATGAGCGACCAGTCGCCGT 300158 Query 153913 -CGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGC 153971 | || | ||| | |||||| ||||| ||||||||||| || || | ||| || ||| Sbjct 300159 TCTGC-TCGACCCTCTTCATGAAGAGATCAGGCACCCAGAGTGCATAGAAGAGCTCACGC 300217 Query 153972 GCCTTGCAA-TCCTCCGCGCCCATGTT---GCGTTTCAGATTGAGCACGCTATAGATGTC 154027 || ||| |||||| || ||| ||| ||| | ||| | | ||| ||| Sbjct 300218 GCAC-GCACCTCCTCCTTTCCGTGGTTCTTGCG---CAGGTCGAGGAACTCAAAGACGTC 300273 Query 154028 GGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGCTTT---CCGCCCTGATC 154084 | |||||| ||||||||||| | || | |||||| |||||| || ||||| || Sbjct 300274 CGAGTGCCATGGTTCAATGTAAATAGCAAAGGCACCGGGACGCTTGTTGCCACCCTGGTC 300333 Query 154085 GACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGC-GGTGC 154143 ||||| |||| | | |||||||||||||| | |||||| | | |||| |||| | | Sbjct 300334 GACGTAGCGCGCAGTGTTGTTGAAGACGCGGAGCATGGGCACAATGCCG-TTGCTGACAC 300392 Query 154144 CGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGC 154203 ||||||| || | |||| | | || | ||| | ||| | ||| |||| Sbjct 300393 CGTTGGTGCCGGCAATGTACGAGCCGGTGCCACGGATGCAATGGATGTTGAGGCCGATGC 300452 Query 154204 CGCC-GCCGTACTTTGATATGGCAGCGC-AGTCGCCCAGCGTCCTGTAGATGCCGTCGAT 154261 | || ||||| ||| || || || | |||| || || ||||||||||||||| Sbjct 300453 CACCGGCCGT-CTTGGAGATCATGGCACAAGTC-TTGAGGGTATCGTAGATGCCGTCGAT 300510 Query 154262 GCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCGCGTTCCCGC 154321 || || | | | | ||| ||||| | | ||||| |||| | | ||| Sbjct 300511 CGAGTCATCCTTCATGGTAACAAGGAAGCACGACGAGAGCTGCGG-GTGCGGGGTACCGG 300569 Query 154322 CG-AAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGGTACGTTT 154380 || ||||| || || ||||| ||||| ||||| ||| | | |||||| | Sbjct 300570 CGTTGAAGAGCGTAGGCGAGGCGTGGGTAAAGTACTTTTGCGACATAAGGTTGTACGTCT 300629 Query 154381 CGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCT 154440 |||||||| ||||| || | |||||| ||||||| ||||| |||||||||||||||| Sbjct 300630 CGATGGCGCTCTCGATGTCCTGGCCGTGGATGCCGACAGCGACTCGCATGAGCATGTGCT 300689 Query 154441 GCGGACGTTCGGCGAC 154456 | ||||| || ||||| Sbjct 300690 GGGGACGCTCTGCGAC 300705 >seq29 Length=43685 Score = 156 bits (172), Expect = 4e-33 Identities = 494/756 (65%), Gaps = 41/756 (5%) Strand=Plus/Minus Query 52086 AACGATGACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGC 52145 ||||| | |||||| | |||||| ||| ||| | ||||||||||| || | ||| | Sbjct 30448 AACGACAATGAGCGCCACTTTATCTCGCATGTGCTTGCGTTCTTCGCTGCGTCGGATGGT 30389 Query 52146 ATCGTGAACATTAACCTCATCGAGTACATGCAG--CGGAACGTTCCGGAACTCGAGGCGC 52203 ||||| ||| |||||| | ||| | ||| ||||| |||| || |||||| | Sbjct 30388 ATCGTCAACGAGAACCTCGTTGAGCGTTT-CAGTTCGGAA-GTTCAGGCCGCCGAGGCTC 30331 Query 52204 AATACTTTTATAATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGC 52263 | ||| || ||| || | | || ||| | | ||| |||||| ||| |||| Sbjct 30330 GTTGCTTCTACGGTTTCCAGATCATGATGGAGAACATCCACTCGGAGACCTACTCGCTGC 30271 Query 52264 TCATTGAGCAGCTGATAAAAGATGAGCACGAGC---GCGACACGCTGCTGAATGCGTTCG 52320 |||| || || || | | | ||||| |||| | || ||| | | || ||| Sbjct 30270 TCATCGA-CA-CTTACATCCG-TGAGCCTGAGCAGCGTGAATATCTGTTTGACGCCGTCG 30214 Query 52321 AGCACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACA 52380 || | | ||| ||| | ||||| | ||||| | |||||| ||||||| Sbjct 30213 AGACCATCCCGGTCGTCAAGCAGAAGGCCGACTGGGCTCTTCGATGGATC---AGCGACA 30157 Query 52381 CC---GCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGttttttt 52437 ||||| | |||||||| |||| || || ||| ||||||||| | ||||| | Sbjct 30156 AGCGTGCCACTTTCGCCGAGCGTCTGGTCGCGTTTGCCGCCGTCGAGGGCATCTTTTTCT 30097 Query 52438 CCGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGT 52497 | ||| || ||| | ||||| | | || | | || | |||||||| || |||| Sbjct 30096 CGGGCTCATTCGCCTCGATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACGT 30037 Query 52498 TCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT----- 52552 || ||||||| | || ||||| ||||| || || |||||||||||||| ||||| Sbjct 30036 TCTCCAACGAGCTCATCTCGCGTGACGAGGGTCTTCACACGGACTTTGCCTGCCTTCTCT 29977 Query 52553 ----CTACTACAAGACGCGCGTG-ACCGAAAAATTGGATTCGGACACGATCCTGAGCATG 52607 | || || || ||||| | ||| | |||||| | || | || Sbjct 29976 TCAGCCACCTCAGGAGGCGCGCGCACC-------------CAGACACGGTGCTCAAGATC 29930 Query 52608 TTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTG 52667 ||| ||||| |||| || || |||| ||| | | | | || |||| ||| Sbjct 29929 ATCACTGAGGCCGTGGAAATTGAGAAGGCGTTCCTGTGCGAATCAATCCCCGTCGCGCTC 29870 Query 52668 CTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTG 52727 | || |||||| || ||||||| | ||||| |||| ||| || ||||| || || Sbjct 29869 ATCGGTATGAACAGCAAGCTCATGTGCCAATACATTGAGTATGTCGCCGATCGCTTGCTG 29810 Query 52728 GTGCAGCTCGGGCAGCCAAAGTACTTCAACGCTCGCA-ATCCGTTTGAGTTTATGAACAA 52786 || |||||| | ||| | ||| | | | | || ||||||||| ||||||| ||| Sbjct 29809 GTATCGCTCGGAAACCCAGTGCACTACGGCTC-CACATGTCCGTTTGACTTTATGACCAA 29751 Query 52787 CATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAA 52822 ||||||| | || |||||||||||||| || ||||| Sbjct 29750 CATTTCGTTGGAAGGCAAGACCAACTTCTTTGAGAA 29715 >seq10 Length=589446 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | || || || | | | |||||||| || ||||||||||| Sbjct 294529 CCACCACGCAGACGAAGCACCAAGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAA 294588 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||||||||| || ||||| | |||| |||||||| ||||| || || Sbjct 294589 AGCGTACGTCCGTCCTCGAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGCGGA 294648 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | |||| || | |||||| | |||||||| Sbjct 294649 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTG-TCGATGGTGTCCGAAGACTCCAC 294707 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || | || ||||| || || || || ||||| |||||||| Sbjct 294708 CTCGAGAGTGATGGTCTTACCCGTGAGGGTCTTGACAAAGATCTGCAT 294755 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || ||||||||||||||| | || || ||| ||||| || ||||| | Sbjct 214658 GACTCTTTCTGAATGTTGTAGTCGGAGAGCGTTCGGCCGTCTTCGAGCTGCTTACCAGCG 214599 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| || || ||||| || ||||| ||||| ||| || || | Sbjct 214598 AAGATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACG 214539 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | ||||| || |||| || | || || || || || || || Sbjct 214538 TTGTCGATGGTGTCCGAGGACTCGACTTCGAGAGTAATGGTCTTGCCCGTGAGCGTCTTA 214479 Query 138601 ACAAAAATCTGCAT 138614 |||||||||||||| Sbjct 214478 ACAAAAATCTGCAT 214465 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| |||||||||||||| || ||| || || ||||| || || |||| | Sbjct 214886 GATTCCTTCTGAATGTTGTAGTCCGACAGAGTGCGACCATCTTCGAGCTGCTTGCCGGCA 214827 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| || || ||||| || ||||| ||||| ||| || || | Sbjct 214826 AAGATAAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACG 214767 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | ||||| || |||| || | || || || || || || || Sbjct 214766 TTGTCGATGGTGTCCGAAGACTCGACTTCGAGAGTGATGGTCTTGCCTGTGAGCGTCTTG 214707 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 214706 ACAAAGATCTGCAT 214693 >seq4 Length=1388522 Score = 89.7 bits (98), Expect = 5e-13 Identities = 121/166 (73%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 || || || || ||||| | |||| |||||||| ||||| || || ||||| || ||| Sbjct 154551 TCTTCAAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGGGGAATACCCTCCTTG 154610 Query 138520 TCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAG 138578 || ||| || || | ||||| | | ||||||| ||||||||||| | || | Sbjct 154611 TCCTGGATCTTGGCCTTGACATTGT-CGATTGTGTCGGAAGACTCCACCTCAAGGGTGAT 154669 Query 138579 CGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCTTATAAT 138624 ||| || || |||||||| || ||||| || |||||||| | |||| Sbjct 154670 CGTCTTGCCGGTCAGAGTCTTGACAAAGATTTGCATGGCCTGTAAT 154715 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| || | ||||| || | || | | |||||||| || ||||||||||| Sbjct 153933 GCCGCCACGGAGTCGCAACACAAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAGTCCGA 153992 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || ||| || || || ||||| | | |||| |||||||| ||||| || || Sbjct 153993 GAGCGTGCGGCCGTCTTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGGGG 154052 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || ||||| ||| || || | | || | ||||||| |||||||| Sbjct 154053 GATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATTGTGTCGGAAGACTCCAC 154112 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| | || | ||| || || |||||||| || Sbjct 154113 CTCAAGGGTGATCGTCTTGCCGGTCAGAGTCTT 154145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262052616320