Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001599495.1_202016-03-01] 56 sequences; 19,606,871 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq10 152 5e-32 seq4 105 6e-18 >seq10 Length=589446 Score = 152 bits (168), Expect = 5e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | |||||| || | || | ||| |||||||| ||||| ||||| ||| Sbjct 214691 CCACCGCGGAGTCGCAATACAAGGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCGGAG 214632 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| || || || ||||| || |||||| |||| | ||||||||||| ||||| Sbjct 214631 AGCGTTCGGCCGTCTTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCAGGAGGA 214572 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||| ||||||||| ||| || ||||| ||||| ||| |||||||| |||||| Sbjct 214571 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGT-CGATGGTGTCCGAGGACTCGAC 214513 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| || | || ||||| || || || || |||||||||||||| Sbjct 214512 TTCGAGAGTAATGGTCTTGCCCGTGAGCGTCTTAACAAAAATCTGCAT 214465 Score = 123 bits (136), Expect = 2e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | || || || || ||||| ||||| || || |||||| ||| || Sbjct 214901 ACCAAGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCCGACAGAGTGCGACCATCTTCG 214842 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 ||||| || || || |||| | ||||||||||| ||||| ||||| |||||||| | Sbjct 214841 AGCTGCTTGCCGGCAAAGATAAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGG 214782 Query 127025 ATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 || || ||||| ||||| ||| |||||||| | ||||||||||| || | || || Sbjct 214781 ATCTTGGCCTTGACGTTGT-CGATGGTGTCCGAAGACTCGACTTCGAGAGTGATGGTCTT 214723 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| || || || || ||||| |||||||| Sbjct 214722 GCCTGTGAGCGTCTTGACAAAGATCTGCAT 214693 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || | |||||| || | |||||||| || || || ||||| || Sbjct 294526 GCACCACCACGCAGACGAAGCACCAAGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCC 294585 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | ||| || || || ||||| || |||||| |||||| |||||||| ||||| Sbjct 294586 GAAAGCGTACGTCCGTCCTCGAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGC 294645 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || ||||||||||||||| ||| || ||||| | |||| |||||||| | ||| Sbjct 294646 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCC 294705 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| || | || || || || || || || ||||| |||||||| Sbjct 294706 ACCTCGAGAGTGATGGTCTTACCCGTGAGGGTCTTGACAAAGATCTGCAT 294755 >seq4 Length=1388522 Score = 105 bits (116), Expect = 6e-18 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || |||||| |||| | |||||||| || || || || ||||||||| Sbjct 154551 TCTTCAAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGGGGAATACCCTCCTTG 154610 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | |||| ||||| | | ||| || || | ||| | | Sbjct 154611 TCCTGGATCTTGGCCTTGACATTGTCGATTGTGTCGGAAGACTCCACCTCAAGGGTGATC 154670 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGC 127116 || |||||||||||||| || ||||| || |||||||| Sbjct 154671 GTCTTGCCGGTCAGAGTCTTGACAAAGATTTGCATGGC 154708 Score = 102 bits (112), Expect = 8e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || || | ||||||||| | || | || ||||| || || || ||||| || Sbjct 153934 CCGCCACGGAGTCGCAACACAAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAGTCCGAG 153993 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || ||||| |||| | |||||||| || || || Sbjct 153994 AGCGTGCGGCCGTCTTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGGGGG 154053 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| ||| || ||||| |||| |||| ||||| | | ||| || Sbjct 154054 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG-TCGATTGTGTCGGAAGACTCCAC 154112 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTT 127098 || | ||| | ||| |||||||||||||| || Sbjct 154113 CTCAAGGGTGATCGTCTTGCCGGTCAGAGTCTT 154145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500467149440