Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001599495.1_202016-03-01] 56 sequences; 19,606,871 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq21 165 1e-35 seq29 123 3e-23 seq3 82.4 9e-11 >seq21 Length=360673 Score = 165 bits (182), Expect = 1e-35 Identities = 909/1429 (64%), Gaps = 49/1429 (3%) Strand=Plus/Plus Query 115876 AACTCACCCGCGAGGGTGCGTCTCAGA-TAGATGTTGGTCGTGTATGGCTCAAAGCACTC 115934 |||||||||||||| || | ||| |||||||||| ||| || ||||| |||||||| Sbjct 299288 AACTCACCCGCGAGCACACGCCG-AGAGTAGATGTTGGACGTATAAGGCTCGAAGCACTC 299346 Query 115935 ATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 115994 || |||| ||| || || || || || ||||| ||||||| || || ||| Sbjct 299347 GTTAAAGCCCAGGATCTGACTCGTCGAAGCGGTCGGCATCGGTGCCAGCAGCAGCGAGTT 299406 Query 115995 GCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGT 116054 ||| || || | || ||||||| | ||||||| | | | | Sbjct 299407 GCGAAGCCCGTGCTTGGCGATCTTGGCCTTGAGCTCCGCCCAGTCCCACAGGTCCGACGG 299466 Query 116055 CTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGT 116114 | || ||||||| || |||| | ||| || || || ||||| || | | || Sbjct 299467 CGTGACCCCCCACATGTCGTACTGCAACTCACCCTGCGAAGCGGGCGAGCCGGCGTACGT 299526 Query 116115 CTCATATGGGCCCTCAACCTCCGCCAATTCGGA-GCTCGCCTCGAGGGCTGCGTGATACA 116173 ||| || ||| | ||| |||| ||| | | |||| || || || ||||| || | Sbjct 299527 CTCGTAGCTGCCGTGCTGCTCAGCCAGCTCGCACGATCGC-TCCAGTGCGGCGTGGTAGA 299585 Query 116174 TTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGC 116233 | |||||||| || | | |||| | | |||||| | || |||||||| | || | Sbjct 299586 TGGTCTCAAAGATCTGCACGTTCAGTCGCCGAGCCTCGGCCGACTCAAACGC-ATACCCC 299644 Query 116234 ACAAA-ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATA 116292 | | || || ||||||| || || || ||||||| || || || || || | ||| Sbjct 299645 ATGATCATGAACGCATCCGCAAGGCCCTGAACACCGATCCCGATCGGACGGTGACGCATG 299704 Query 116293 TTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTT 116352 || ||||| || || ||| || ||||| | || | ||||| | | | || || || Sbjct 299705 TTGGACTTGCGCGCCTCCTCGACCGGATAGTAGTTAATGTCGATGATCTTGTTCAGGTTC 299764 Query 116353 TTGGTGACAACCTTTGTGA---TTTCATGAAGCTTT---TCGTAA-TCAAAACTGCGAGT 116405 ||| || |||| | | | | || |||| ||||| || || || Sbjct 299765 TTGCAGATGGCCTTGGCAACGCTGTGCAGACGCTTAAAGTCGTACGTCT----TG---GT 299817 Query 116406 CTCT---TCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTC 116462 | || ||| ||| || | || || ||||| || || || || ||||| | ||| Sbjct 299818 CACTGGGTCAATGA---ACGTGGGCAGTGCGATCGAGGCGAGGTTGCACACTGCCACCTC 299874 Query 116463 ATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAA 116522 || | | ||||||| || || || |||||||| || || | ||| || ||||| | Sbjct 299875 GTCGGGAGCGCTGTACTCGATGATCTCGGTACACAAGTTGGAGCACTTGATCGTGCCGAG 299934 Query 116523 GTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGT 116582 |||||| || || ||| ||| || |||||||| || || | || | ||||| Sbjct 299935 GTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACAGGATGAAAGGGTTGCCCGT 299994 Query 116583 CTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGG 116641 ||| || || |||| ||| || || | ||| | | || ||| | | || ||| || | Sbjct 299995 CTCGGTCTGTGACTCGAGGATGGCGTACCAGAGCTTCTGCGCTTTG-ACGGTGCGCTTCG 300053 Query 116642 CTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCC-TCT 116700 || ||||| ||||||| ||||||| ||||||||| ||||| ||| || Sbjct 300054 AGCGACCCTCGGCCTCGTAGCGCTCGTAGAGGCGCTCAAACTCGTCACCGT-AGCAGTCG 300112 Query 116701 GAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGC 116760 | || || || || | || || | ||| ||||| | || || ||| |||| | Sbjct 300113 GCCAGACCAGGGCACTCGTTGGGGCACATGAGCGACCAGTCGCCGTTCTGCTCGACCCTC 300172 Query 116761 TTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCA 116820 ||||||||||| || || | |||||| || ||||||| || || || | || || Sbjct 300173 TTCATGAAGAGATCAGGCACCCAGAGTGCATAGAAGAGCTCACGCGCACGCACCTCCTCC 300232 Query 116821 TCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGG 116880 | || || || |||| || | || || | || |||| |||||| ||||| | | Sbjct 300233 TTTCCGTGGTTCTTGCGCAGGTCGAGGAACTCAAAGACGTCCGAGTGCCATGGTTCAATG 300292 Query 116881 TACACCGCGATTGACCCCTTGCGACG------ACCAGCCTGGTTTACATACCTCGCCGTT 116934 || | || | | || | |||| ||| |||||| || || | ||| || Sbjct 300293 TAAATAGCAAAGGCACC---GGGACGCTTGTTGCCACCCTGGTCGACGTAGCGCGCAGTG 300349 Query 116935 GCGTTAAATACGCGAAGCATTGGAATGATACCAT--CAGATTGGCCATTTGTCCCCCGAA 116992 ||| || ||||| ||||| || | || || | | || || || || || || Sbjct 300350 TTGTTGAAGACGCGGAGCATGGGCACAATGCCGTTGCTGA--CACCGTTGGTGCCGGCAA 300407 Query 116993 --TACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTT 117050 |||||| | | || | | || ||||||| | || || || || ||| ||| Sbjct 300408 TGTACGAGCC--GGTGCCACGGATGCAATGGATGTTGAGGCCGATGCCACCGGCCGTCTT 300465 Query 117051 TGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATT 117110 ||||| || || | |||| | ||||||| || |||||||||||| |||| | Sbjct 300466 GGAGATCATGGCACAAGTCTTGAGGGTATCGTAGATGCCGTCGATCGAGTCATCCTTCAT 300525 Query 117111 TGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGG 117170 | | |||||||| ||| | || || || ||||| ||||||||||| || || Sbjct 300526 GGTAACAAGGAAGCACGACGAGAGCTGCGGGTGCGGGGTACCGGCGTTGAAGAGCGTAGG 300585 Query 117171 TGTCGCGTGGATGAACATAC-CTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAA 117229 | |||||| | || ||| ||| ||||| | ||| ||||| | | | | Sbjct 300586 CGAGGCGTGGGT-AAAGTACTTTTGCGACATAAGGTTGTACGTCTCGATGGCGCTCTCGA 300644 Query 117230 TGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATGTATTGGGG 117278 |||| | ||||| || |||| | ||| ||||| | ||||| ||||| Sbjct 300645 TGTCCTGGCCGTGGATGCCGACAGCGACTCGCATGAGCATGTGCTGGGG 300693 >seq29 Length=43685 Score = 123 bits (136), Expect = 3e-23 Identities = 122/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| |||||||||||||| |||||||| || || ||||| ||||| Sbjct 29988 GCAAAGTCCGTGTGAAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAACGTGAGACCG 30047 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||||||||| |||||||| | |||||| |||| |||||||| ||||| ||||| Sbjct 30048 GGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGAGGCGAATGAGCCCGAGAAAAAGATG 30107 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAA 127677 ||||| || || ||||| | ||||||||||| || Sbjct 30108 CCCTCGACGGCGGCAAACGCGACCAGACGCTCGGCGAA 30145 >seq3 Length=1579684 Score = 82.4 bits (90), Expect = 9e-11 Identities = 96/126 (76%), Gaps = 4/126 (3%) Strand=Plus/Minus Query 170396 CCGAAGAACCATATGAGGGTGCGACTGTCCTGGAGGCCCAAA--AGGGTGCGTACTATAC 170453 ||||||| | ||| || ||||| |||||||||||| |||||| ||| | | || || Sbjct 1532639 CCGAAGACCAATACGAAGGTGCCACTGTCCTGGAG-CCCAAAGCAGGCTAC-TATGATCG 1532582 Query 170454 CCCGATCACAGCCCTTGATTTTGAAGCACTGTATCCATCAATTATGATGGCACACAACTT 170513 || ||| || |||| ||||| | | | |||||||| || | ||||||||||||||| | Sbjct 1532581 ACCCATCGCAACCCTGGATTTCGCATCGCTGTATCCCTCGGTCATGATGGCACACAACCT 1532522 Query 170514 GTGCTA 170519 ||||| Sbjct 1532521 TTGCTA 1532516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506770544960