Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001599495.1_202016-03-01] 56 sequences; 19,606,871 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq21 143 4e-29 seq29 131 3e-25 >seq21 Length=360673 Score = 143 bits (158), Expect = 4e-29 Identities = 513/774 (66%), Gaps = 36/774 (5%) Strand=Plus/Plus Query 203848 CGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGTCTTTAG 203907 ||| || || || |||||| || ||| || ||| |||||||||| | || ||||| || Sbjct 298936 CGTAAATTGGATCGCGTTCGACGCCGGCTTGGTTCGCAGATAGTACGTACCCGTCTTGAG 298995 Query 203908 GCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTT-TGCTCACGTTGGGGTCGGCCA 203966 ||||| | ||| ||||| | |||||| || | || | | | |||| || | || | Sbjct 298996 TCCCTTTTTCCAGCCGTAAAAGTGCATCGAGGTGAGCTGTCCAAACGTCGGTGCCGAA-A 299054 Query 203967 TGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTG 204025 ||||||||| || ||||| ||| ||| ||| || || || || || ||||| | | Sbjct 299055 GGTGAATGTTGAGCGACTGCGACTGGCAGAT-AAACGCTCCTCGGTCCGCAGCCATGTCG 299113 Query 204026 ATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA-CGTCTCTGGTGTGTTGAGG 204084 || || | |||||| |||||||| ||||||||| ||| | ||| || || | | ||| Sbjct 299114 ATGATCGCCTTCTGGCTGATCTCCCAGACCGTCTTGTACAGCTTCT-TGATGCGGTCAGG 299172 Query 204085 CACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTC---TCATCCTCGTCT 204140 | || | |||| ||| ||||| ||| || || || | | || || |||| | Sbjct 299173 AATGCCTGGC-ACGTTCTGGATCGATCCGCCGTGCGCGATGATACGGTTCTTCATCGTGT 299231 Query 204141 CCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGAA 204200 | | || ||| |||| | | |||||| |||| || ||||| | | ||| | Sbjct 299232 CGTTCC---ACAGGCCCTGCTCCACCAGCTCGCGCAACAACCACGGGTTCACCACCTGGA 299288 Query 204201 AGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCGT 204260 | || || | ||||| | || | | | | |||| || | || ||||| ||||| Sbjct 299289 ACTCACCCGCGAGCACACGCCGAGAGTAGATGTTGGACGTATAAGGCTCGAAGCACTCGT 299348 Query 204261 TGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTGC 204320 | ||| | |||||| || || || ||||| || ||||| ||||| ||||||| Sbjct 299349 TAAAGCCCAGGATCTGACTCGTCGAAGCGGTCGGCATCGGTGCCAGCAGCAGCGAGTTGC 299408 Query 204321 GCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCA--TCGCACTGGG 204378 | | |||| || || | || ||| || | |||||| || || || | | Sbjct 299409 GAAGCCCGTGCTTGGCGATCTTGGCCTTGAGCTCCGCCCAGTCCCACAGGTCCGACGGCG 299468 Query 204379 TTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGC-TGCCCTTGTACG 204437 | || |||||||||||| |||| || || || | | |||| ||| ||||| Sbjct 299469 TG--ACCCCCCACATGTCGTACTGCAACTCACCCTG-CGAAGCGGGCGAGCCGGCGTACG 299525 Query 204438 TCGGATAAGGCTG--ATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGCGTGATAGTA 204495 || || |||| | || || ||||||| |||||| ||| ||| | ||| Sbjct 299526 TCTCGTA--GCTGCCGTGCTGCTCAGCCAGCTCGCACGATCGCTCCAGTGCGGCGTGGTA 299583 Query 204496 CATGGTCTCAAAGATCTGAACGTTTAATCTGGCG-GCCTCCGTTCCG--TCAAACGCCAG 204552 ||||||||||||||||| ||||| | || | || ||||| | ||| ||||||| || Sbjct 299584 GATGGTCTCAAAGATCTGCACGTTCAGTC-GCCGAGCCTCGG--CCGACTCAAACG-CAT 299639 Query 204553 ACCCAGCATG-GCA--AACACGTCCGCCAAGCCCTGCACTCCGATTCCCAACGG 204603 |||| |||| || ||| | ||||| | |||||| || ||||| || | ||| Sbjct 299640 ACCC--CATGATCATGAACGCATCCGCAAGGCCCTGAACACCGATCCCGATCGG 299691 >seq29 Length=43685 Score = 131 bits (144), Expect = 3e-25 Identities = 293/436 (67%), Gaps = 7/436 (2%) Strand=Plus/Plus Query 159733 TCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTCGATGTAGCTACACATCTGCTCACA 159792 |||||| | ||||||| | || || ||| | || ||||| ||||| ||| | Sbjct 29798 TCCGAGCGATACCAGCAAGCGATCGGCGACATACTCAATGTATTGGCACATGAGCTTGCT 29857 Query 159793 GTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGAC 159852 ||| || || | ||| ||||||| | ||| |||| ||| |||||||||| || || Sbjct 29858 GTTCATACCGATGAGCGCGACGGGGATTGATTCGCACAGGAACGCCTTCTCAATTTCCAC 29917 Query 159853 CGCTTCGGTCACAATCTGCGAGACACGTTCGTACCCCGG--CTTGCCCAAAATGTGGTCC 159910 || || || | |||| ||| ||| ||| | || | || | || ||| Sbjct 29918 GGCCTCAGTGATGATCTT-GAG-CAC---CGTGTCTGGGTGCGCGCGCCTCCTGAGGTGG 29972 Query 159911 TTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTG 159970 | || || ||||| |||||||| ||| || |||||||| || ||||||| ||||||| Sbjct 29973 CTGAAGAGAAGGCAGGCAAAGTCCGTGTGAAGACCCTCGTCACGCGAGATGAGCTCGTTG 30032 Query 159971 GACATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCA 160030 || | |||| || ||||||| || ||| |||||||| || || | || || | Sbjct 30033 GAGAACGTGAGACCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGAGGCGAATGAG 30092 Query 160031 CCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCG 160090 || |||||||| ||||| ||||| |||||||| || || | ||| | |||| ||| Sbjct 30093 CCCGAGAAAAAGATGCCCTCGACGGCGGCAAACGCGACCAGACGCTCGGCGAAAGTGGCA 30152 Query 160091 TTGGTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGC 160150 |||| | |||| | ||||| || ||||||| || | ||| ||| | Sbjct 30153 CGCTTGTCGCTGATCCATCGAAGAGCCCAGTCGGCCTTCTGCTTGACGACCGGGATGGTC 30212 Query 160151 TCGACGGCGTTAAACA 160166 |||||||||| ||||| Sbjct 30213 TCGACGGCGTCAAACA 30228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795154643391360