Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001599495.1_202016-03-01] 56 sequences; 19,606,871 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq29 327 1e-84 seq10 122 9e-23 seq4 105 7e-18 >seq29 Length=43685 Score = 327 bits (362), Expect = 1e-84 Identities = 406/553 (73%), Gaps = 11/553 (2%) Strand=Plus/Plus Query 132894 GCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAA 132953 ||| |||||||| || | |||||||| | || ||||| |||||| ||| || | Sbjct 29984 GCAGGCAAAGTCCGTGTGAAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAACGTGAG 30043 Query 132954 GCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAA 133013 ||||||||||| ||||| || |||||||| || || | |||||| |||||| || || Sbjct 30044 ACCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGAGGCGAATGAGCCCGAGAAAAA 30103 Query 133014 GACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGC 133073 || |||||||||||| || || || ||||| |||||| |||| ||||| ||| | Sbjct 30104 GATGCCCTCGACGGCGGCAAACGCGACCAGACGCTCGGCGAAAGTGGCACGCTTGTCGCT 30163 Query 133074 GATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTT 133133 |||||| || || ||||| |||||||| | |||||| ||| || || |||| ||||| Sbjct 30164 GATCCATCGAAGAGCCCAGTCGGCCTTCTGCTTGACGACCGGGATGGTCTCGACGGCGT- 30222 Query 133134 CAACAAACGGAGTTT--CTCTTCCGAGG--AACGCACGTAGGTGTCGATGAGGGTCGAAT 133189 ||||| || || | || | ||| ||| | ||| ||||||||||| ||| | Sbjct 30223 ---CAAACAGATATTCACGCTGCTCAGGCTCACGGATGTAAGTGTCGATGAGCAGCGAGT 30279 Query 133190 ACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGA 133249 | | |||||||| | ||||||||| ||| || || ||||| ||||| || |||||| Sbjct 30280 AGGTCTCCGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAACGAGCCTCGG 30339 Query 133250 CCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGG 133309 | |||| ||||| | ||||||||| || || || ||||||||||| || || | Sbjct 30340 CGGCCTGAACTTCCGAACTGAAACGCTCAACGAGGTTCTCGTTGACGATACCATCCGACG 30399 Query 133310 CGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCA---AGCGCT 133366 | ||||| || || ||||| ||| ||| || |||||||| |||||||||| | | Sbjct 30400 CAGCGAAGAACGCAAGCACATGCGAGATAAAGTGGCGCTCATTGTCGTTCAGCTTGTTGT 30459 Query 133367 CCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGG 133426 |||||||| | ||||||||| ||||| | |||||| ||||||| || || ||||||| Sbjct 30460 CCCAGTCGTGGAGGTCCTTGGAAAGGTCGATCTCCTCTGCGGTCCAGAAGGAAGCCTCGG 30519 Query 133427 CTTTTTTGTACAT 133439 | || |||||||| Sbjct 30520 CCTTCTTGTACAT 30532 >seq10 Length=589446 Score = 122 bits (134), Expect = 9e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || || || |||||||| || |||||||| |||| || ||| | Sbjct 294758 AAGATGCAGATCTTTGTCAAGACCCTCACGGGTAAGACCATCACTCTCGAGGTGGAGTCT 294699 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || | || |||| ||||| ||||| ||||| ||||| Sbjct 294698 TCGGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCCGAC 294639 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| || || | ||| || || ||||| || |||| || || || |||||| Sbjct 294638 CAGCAGCGTCTGATCTTCGCTGGTAAGCAGCTCGAGGACGGACGTACGCTTTCGGACTAC 294579 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| ||||| | || ||||| |||||||| ||| || | || || Sbjct 294578 AACATCCAGAAGGAGTCTACCCTGCACTTGGTGCTTCGTCTGCGTGGTGG 294529 Score = 118 bits (130), Expect = 1e-21 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || |||||||||||||| ||||| || |||| |||||| || | Sbjct 214465 ATGCAGATTTTTGTTAAGACGCTCACGGGCAAGACCATTACTCTCGAAGTCGAGTCCTCG 214524 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| || || ||||| | || || Sbjct 214525 GACACCATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCA 214583 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | ||| || || ||||| || |||| || || ||| ||||||||| Sbjct 214584 GCAGCGTCTCATCTTCGCTGGTAAGCAGCTCGAAGACGGCCGAACGCTCTCCGACTACAA 214643 Query 38423 CATCCAAAAGGAAGCGACGCTGCA 38446 ||| || || || ||||||| || Sbjct 214644 CATTCAGAAAGAGTCGACGCTTCA 214667 Score = 109 bits (120), Expect = 5e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || |||||||| ||||| |||||||| |||| |||||| | | Sbjct 214693 ATGCAGATCTTTGTCAAGACGCTCACAGGCAAGACCATCACTCTCGAAGTCGAGTCTTCG 214752 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| || || ||||| | || || Sbjct 214753 GACACCATCGACAACG-TCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGATCA 214811 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || ||||| ||||| || || | ||||| || |||||||| Sbjct 214812 GCAGCGTCTTATCTTTGCCGGCAAGCAGCTCGAAGATGGTCGCACTCTGTCGGACTACAA 214871 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||| || |||||| | || || || ||||| || ||| Sbjct 214872 CATTCAGAAGGAATCCACTCTTCACTTGGTCCTTCGT 214908 >seq4 Length=1388522 Score = 105 bits (116), Expect = 7e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAGAA 38327 || || || ||||| ||| | || || ||| || | |||| | | | | | || | Sbjct 1195837 ACAGGTAAGACCATTACCCTTGAGGTGGAGTCCTCGGACACCATCGACAATGTCAAGGCC 1195896 Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || || | ||||| ||||| |||||| ||||||| ||||| || || | ||| || || Sbjct 1195897 AAGATTCAGGACAAGGAGGGTATTCCCCCCGACCAGCAGCGCCTGATCTTCGCCGGTAAG 1195956 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 ||||| || || | ||||||||| |||||||||||||| |||||| |||| || || Sbjct 1195957 CAGCTCGAGGATGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAATCGACCCTCCAC 1196016 Query 38448 TTGGTGCTGCGTTTGAGAGGCGG 38470 | ||||| ||| || | || || Sbjct 1196017 CTTGTGCTCCGTCTGCGTGGTGG 1196039 Score = 100 bits (110), Expect = 3e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 38259 AAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AAC 38317 || || || || ||||| || |||||| | || || ||| | |||||| | | ||| Sbjct 154145 AAGACTCTGACCGGCAAGACGATCACCCTTGAGGTGGAGTCTTCCGACACAATCGACAAC 154086 Query 38318 GCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTA 38377 | | || | || |||| ||||| ||||| || ||| | ||||| ||||| ||||| | Sbjct 154085 G-TCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCTGACCAGCAGCGTCTCATCTT 154027 Query 38378 CGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGC 38437 || || || ||||| || |||| ||||| ||| |||||||||||||| ||||| | Sbjct 154026 TGCTGGTAAGCAGCTTGAAGACGGCCGCACGCTCTCGGACTACAACATCCAGAAGGAGTC 153967 Query 38438 GACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||| || || | ||| |||| | | |||||| Sbjct 153966 GACACTTCACCTTGTGTTGCGACTCCGTGGCGGC 153933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172449879040