Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001599495.1_202016-03-01] 56 sequences; 19,606,871 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq21 174 2e-38 >seq21 Length=360673 Score = 174 bits (192), Expect = 2e-38 Identities = 1126/1780 (63%), Gaps = 63/1780 (4%) Strand=Plus/Plus Query 109376 TAAATTGGATTGG--TCGA-GCTTTCGCCTTCGAGCGAAGATAATACATACCCGTTTTGA 109432 |||||||||| | |||| || || ||| | || ||||| ||| ||||||| |||| Sbjct 298938 TAAATTGGATCGCGTTCGACGC---CGGCTTGGTTCGCAGATAGTACGTACCCGTCTTGA 298994 Query 109433 GACCAGCCTTCCATGCGTACATATGCATTGAAGAGAGTTTGGAAAGTGTCGGACTCTCCA 109492 | || ||||| |||| | ||||| || | ||| | || ||||| | | Sbjct 298995 GTCCCTTTTTCCAGCCGTAAAAGTGCATCGAGGTGAGCTGTCCAAACGTCGG----TGCC 299050 Query 109493 TAAAC----AAGTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATG 109548 ||| | ||| | |||||| ||||| ||| || || || || || |||||| Sbjct 299051 GAAAGGTGAATGTTGAGCGACTGCGACTGGCAGATAAACGCTCCTCGGTCCGCAGCCATG 299110 Query 109549 TCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCG 109608 |||||||| ||| ||||| || |||||||| |||||||||| |||||||| || Sbjct 299111 TCGATGATCGCCTTCTGGCTGATCTCCCAGACCGTCTTGTACAGCTTCTTGATGCGGTCA 299170 Query 109609 GGAATGTCCACGATGTTTTGAATAGAGCCACCAGCCTTCACCATGAGA---TCCTTCATC 109665 |||||| | | ||| || || || || || | | | |||| | | ||||||| Sbjct 299171 GGAATGCCTGGCACGTTCTGGATCGATCCGCCG---TGCGCGATGATACGGTTCTTCATC 299227 Query 109666 TCTTTCGA-CCAGAGACCGACCTTTTTGAGATCGT-CAACAAGATGCTTGTTGACCACGA 109723 | ||| ||| || || || || ||| |||||| | ||| ||||| Sbjct 299228 G-TGTCGTTCCACAGGCCCTGCTCCACCAGCTCGCGCAACAACCA-CGGGTTCACCACCT 299285 Query 109724 CAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACT 109783 || ||||| || || || || ||||||||| | ||| || || ||||| |||| Sbjct 299286 GGAACTCACCCGCGAGCACACGCCGAGAGTAGATGTTGGACGTATAAGGCTCGAAGCACT 299345 Query 109784 CATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGT 109843 | || ||| ||||| || || ||||| || ||||| || |||| || || || Sbjct 299346 CGTTAAAGCCCAGGATCTGACTCGTCGAAGCGGTCGGCATCGGTGCCAGCAGCAGCGAGT 299405 Query 109844 TTCGGAGACC---CTTCG---TCTTTACCCGCTCACGCATTGCGTCCCAATCATA-ACGA 109896 | || || || ||| | |||| || | | || | || |||| || | | | Sbjct 299406 TGCGAAGCCCGTGCTTGGCGATCTTGGCCT--TGA-GC--TCCG-CCCAGTCCCACAGGT 299459 Query 109897 CC-ACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGG 109955 || || | | ||| ||||||| || || | |||||| | ||| || Sbjct 299460 CCGACG-------GCGTGACCC-CCCACATGTCGTACTGCAACTCACCCTGCGAAGCGGG 299511 Query 109956 AGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAG 110015 || || | | ||||||| || | ||| |||| |||| | || ||| || Sbjct 299512 CGAGCCGGCGTACGTCTCGTAGCTGCCGTGCTGCTCAGCCAGCTCGCACGATCGCTCCAG 299571 Query 110016 TGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTC 110075 ||| || || || || |||||||| || || | |||| | |||| ||| | | || Sbjct 299572 TGCGGCGTGGTAGATGGTCTCAAAGATCTGCACGTTCAGTCGCCGAGCCTCGGCCGACTC 299631 Query 110076 GAAGGGAAGACCACAA-AGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGG 110134 || | | ||| || | || ||| ||||||| || ||||||||||||| || || | Sbjct 299632 AAACGCAT-ACCCCATGATCATGAACGCATCCGCAAGGCCCTGAACACCGATCCCGATCG 299690 Query 110135 GGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGA 110194 | || || |||||| || || || || || || || |||| |||||||| Sbjct 299691 GACGGTGACGCATGTTGGACTTGCGCGCCTCCTCGACCGGATAGTAGTTAATGTCGATGA 299750 Query 110195 CCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACG 110254 | || || ||||| | | ||| | | || || | | ||| ||| Sbjct 299751 TCTTGTTCAGGTTCTTGCAGATGGCCTTGGCAACGCTGTGCAGACGCTTAAAGTCGTACG 299810 Query 110255 TTTTCGTCTCC---TTATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAG 110311 | || ||| | | | ||| | |||| || || || || || || |||||||| | Sbjct 299811 TCTTGGTCACTGGGTCAATGA---ACGTGGGCAGTGCGATCGAGGCGAGGTTGCACACTG 299867 Query 110312 AAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGA 110371 |||||| || |||| || | || || |||||||||||||| | ||| || Sbjct 299868 CCACCTCGTCGGGAGCGCTGTACTCGATGATCTCGGTACACAAGTTGGAGCACTTGATCG 299927 Query 110372 CACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGG 110431 || | ||||||||| || ||| |||| || ||||| || || ||| | ||| Sbjct 299928 TGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACAGGATGAAAGGGT 299987 Query 110432 TACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGTT 110490 | || || || |||||||||| ||| ||||| | ||| | | || || || ||| | | Sbjct 299988 TGCCCGTCTCGGTCTGTGACTCGAGGATGGCGTACCAGAGCTTCTGC-GCTTTGAC-GGT 300045 Query 110491 GCG-TTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTA 110549 ||| || | | |||| || ||||||| ||| | | |||||| || | ||||| Sbjct 300046 GCGCTTCGAGCGACCCTCGGCCTCGTAGCGCTCGTAGAGGCGCTCAAACTCGTCACCGTA 300105 Query 110550 CACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTC 110609 || | ||||| || || ||| || | ||| ||||| | || || ||| Sbjct 300106 GCAGTCGGCCAGACCAGGGCACTCGTTGGGGCACATGAGCGACCAGTCGCCGTTCTGCTC 300165 Query 110610 AACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGC 110669 |||||||||||||| || ||||| | ||| | || |||| || ||||| ||| | Sbjct 300166 GACCCTCTTCATGAAGAGATCAGGCACCCAGAGTGCATAGAAGAGCTCACGCGCACGCAC 300225 Query 110670 CTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGG 110729 ||| || | || ||||| ||| || || | || || | || |||||||||||||| Sbjct 300226 CTCCTCCTTTCCGTGGTTCTTGCGCAGGTCGAGGAACTCAAAGACGTCCGAGTGCCATGG 300285 Query 110730 TTCGAGATAGACAGCGATGGATCCCTTACG---ACGACCCGCCTGGTTAACATAGCGTGC 110786 ||| | || | ||| | || || ||| || |||||| || ||||| || Sbjct 300286 TTCAATGTAAATAGCAAAGGCACCGGGACGCTTGTTGCCACCCTGGTCGACGTAGCGCGC 300345 Query 110787 TGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCT 110846 ||| |||||||| | |||||| || | ||| || | | ||| || || || Sbjct 300346 AGTGTTGTTGAAGACGCGGAGCATGGGCACAATGCCGTTGCTGACACCGTTGGTGCCGGC 300405 Query 110847 AATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTT 110906 ||| || || |||| ||| ||||| | | || || ||||| ||| ||| Sbjct 300406 AATGTACGAGCCGGTGCCACGGATGCAATGGATGTTGAGGCCGATGCCACCGGCCGTCTT 300465 Query 110907 ACTAATTTGTGCAC-ACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGT 110965 || |||| | ||| |||| ||| | || || || || ||||| || |||| Sbjct 300466 GGAGATCATGGCACAAGTCT-TGAGGGTATCGTAGATGCCGTCGATCGAGTCATCCTTCA 300524 Query 110966 TGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAG 111025 ||| || || ||||| || || | ||| || | || || || || |||||||| |||| Sbjct 300525 TGGTAACAAGGAAGCACGACGAGAGCTGCGGGTGCGGGGTACCGGCGTTGAAGAGCGTAG 300584 Query 111026 GTGTCGCATGAATGAACAGACCTTGGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTA 111085 | | || || | || ||| ||||| |||||| || |||| ||| | Sbjct 300585 GCGAGGCGTGGGTAAAGTACTTTTGCGACATAAGGTTGTACGTCTCGATGGCGCTCTCGA 300644 Query 111086 CATCTTTACCGTGAATACCAATGGCAACTCGCATGAACAT 111125 || | ||||| || || | || |||||||||| ||| Sbjct 300645 TGTCCTGGCCGTGGATGCCGACAGCGACTCGCATGAGCAT 300684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975587716800