Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001599495.1_202016-03-01] 56 sequences; 19,606,871 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq16 114 8e-20 seq10 96.9 2e-14 >seq16 Length=557755 Score = 114 bits (126), Expect = 8e-20 Identities = 361/553 (65%), Gaps = 10/553 (2%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 || || ||||| ||| | || ||||| ||| ||||| || || |||||||||| Sbjct 302260 GCCATCGGTATCGATCTTGGTACTACCTACTCCTGTGTCGCCGTCTGGCAAAATGACCGT 302319 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || | |||||||| ||||| ||||| | || || || |||||||| | || || Sbjct 302320 GTCGAGGTCATTGCCAACGACCAGGGTAACCGCACTACCCCCTCATATGTCGCCTTCACC 302379 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || | || | ||| ||||||||||| || || | || | || || ||| || Sbjct 302380 GACTCGGAGCGTCTCATTGGAGATGCCGCCAAGAACCAGGTCGCCATGAACCCTCACAAC 302439 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568 || | || || || || | ||||| || || || || || || | ||||| ||| Sbjct 302440 ACCGTCTTCGACGCCAAGCGTTTGATCGGCCGCAAGTTCGACGACGCTGAGGTCCAGTCT 302499 Query 474569 GATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAA--ACCATATATAGAAG 474626 || ||| || |||||||| |||| | || ||||| || ||| || | Sbjct 302500 GACATGAAGCACTGGCCTTTCGAGGTTACCTCGGTCGGTGGCAAGCCCCAGATTCGCATT 302559 Query 474627 CAATACACGCAGGTGAAACTAAACAATTTTCA--CCGGAACAAATTTCTTCAATGGTTTT 474684 |||||| | ||||| | | | | ||||| || ||| | || || || |||||| | Sbjct 302560 GAATACAAG--GGTGAGA--AGAAGACTTTCACTCCCGAAGAGATCTCATCCATGGTTCT 302615 Query 474685 AGCCAAAATGAAACAAACCG-CGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAA 474743 ||| ||| | || | |||| | || || || || | ||||| || Sbjct 302616 CCTCAAGATGCGCGAGACTGCCGAG-GCTTACCTCGGTGGTACCGTCAAGGATGCTGTCG 302674 Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803 | |||||||| || || || || || || || || || || || || ||||| || | | Sbjct 302675 TCACTGTTCCCGCTTACTTCAACGACTCGCAGCGACAGGCCACCAAGGATGCTGGTATCA 302734 Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATG 474863 || | || ||||| || | ||||| || || || || || || ||||| | ||||| | Sbjct 302735 TTTCGGGCCTTAACGTGATGCGTATCATCAACGAGCCCACTGCTGCCGCCATCGCTTACG 302794 Query 474864 GTCTTGATAAGAA 474876 |||| || ||||| Sbjct 302795 GTCTCGACAAGAA 302807 >seq10 Length=589446 Score = 96.9 bits (106), Expect = 2e-14 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 || || || | |||||| ||||| || ||||| || || || || | || ||| Sbjct 214685 CGGAGTCGCAATACAAGGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCGGAGAGCGTT 214626 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | | ||||| || ||||| ||||| || || ||||| || |||||||||||||| ||| Sbjct 214625 CGGCCGTCTTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCAGGAGGAATGCCT 214566 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731 |||||||| || ||||| ||||| || || || || | | ||| || Sbjct 214565 TCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTCGACTTCGAGA 214506 Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || || ||||| |||||||| ||||| || Sbjct 214505 GTAATGGTCTTGCCCGTGAGCGTCTTAACAAAAATCTG 214468 Score = 96.9 bits (106), Expect = 2e-14 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||||||||| || || | ||||| || ||| || || || || || | ||||| Sbjct 214914 ACGAAGACGAAGGACCAAGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCCGACAGAGT 214855 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | |||||| || ||||| || ||||| |||||||| || |||||||||||||| || Sbjct 214854 GCGACCATCTTCGAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGATCAGGAGGAATGCC 214795 Query 480671 TTCCTTGTCTTGAATCTT 480688 |||||||||||| ||||| Sbjct 214794 TTCCTTGTCTTGGATCTT 214777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268176797888288