Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001599495.1_202016-03-01] 56 sequences; 19,606,871 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq21 192 7e-44 seq29 102 1e-16 >seq21 Length=360673 Score = 192 bits (212), Expect = 7e-44 Identities = 893/1396 (64%), Gaps = 35/1396 (3%) Strand=Plus/Minus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| ||||||| ||||| ||||||||||||| | ||||| || | | Sbjct 300693 CCCCAGCACATGCTCATGCGAGTCGCTGTCGGCATCCACGGCCAGGACATCGAGAGCGCC 300634 Query 75272 TTGGAGACATACGACAAGATGTCCCAAG-GTATGTTCATTCACGCAACACCAACCCTCTT 75330 | ||||| ||| || ||||| ||| ||| || | ||||| | || || ||||| Sbjct 300633 ATCGAGACGTACAACCTTATGTCGCAAAAGTACTTT-ACCCACGCCTCGCCTACGCTCTT 300575 Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390 ||| || ||||| || |||||| | || ||||||||| | ||| ||||| || Sbjct 300574 CAACGCCGGTACCCCGCACCCGCAGCTCTCGTCGTGCTTCCTTGTTACCATGAAGGATGA 300515 Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 75450 ||| ||| |||| ||||| | || || | | ||||| ||||| ||| ||| || Sbjct 300514 CTCGATCGACGGCATCTACGATACCCTCAAGACTTGTGCCATGATCTCCAAGACGGCCGG 300455 Query 75451 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTA--TTCGGGGGACA 75508 || || || | |||||||| | | | || |||||| || || || Sbjct 300454 TGGCATCGGCCTCAACATCCATTGCATCCGTGGCACCGG--CTCGTACATTGCCGGCACC 300397 Query 75509 AATGGTCAATCAG--ATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 75566 || ||| |||| | || ||| | || ||||| ||||| || ||| ||| ||||||| Sbjct 300396 AACGGTG--TCAGCAACGGCATTGTGCCCATGCTCCGCGTCTTCAACAACACTGCGCGCT 300339 Query 75567 ATGTAAATCAAGCGGG------GCGTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCAT 75620 | || | || | || ||||| | || || | || | ||| | ||||||| Sbjct 300338 ACGTCGACCAGGGTGGCAACAAGCGTCCC---GGTGCCTTTGCTATTTACATTGAACCAT 300282 Query 75621 GGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTC 75680 |||| | || || | |||||||| || | || ||||| || | || |||| | Sbjct 300281 GGCACTCGGACGTCTTTGAGTTCCTCGACCTGCGCAAGAACCACGGAAAGGAGGAGGTGC 300222 Query 75681 GGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGG 75740 | | || ||||| | | || ||| | || || || ||||||||| |||| ||| Sbjct 300221 GTGCGCGTGAGCTCTTCTATGCACTCTGGGTGCCTGATCTCTTCATGAAGAGGGTCGAGC 300162 Query 75741 AGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGG 75800 || || | ||||| || | || || || || || ||||| ||||| | Sbjct 300161 AGAACGGCGACTGGTCGCTCATGTGCCCCAACGAGTGCCCTGGTCTGGCCGACTGCTACG 300102 Query 75801 GTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCG-ACT 75859 |||| |||||||| ||||||| || || | |||||| | | || ||| || Sbjct 300101 GTGACGAGTTTGAGCGCCTCTACGAGCGCTACGAGGCCGAGGGTCGCTCGAA-GCGCACC 300043 Query 75860 GTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACC 75918 || | | ||| || | | ||| | || || ||| | |||||||| ||||| || | || Sbjct 300042 GT-CAAAGCGCAGAAGCTCTGGTACGCCATCCTCGAGTCACAGACCGAGACGGGCAACCC 299984 Query 75919 ATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAAT 75978 | || || |||||||| || ||| ||||| ||||| ||||| | || || || Sbjct 299983 TTTCATCCTGTACAAGGACGCCGCCAACCGCAAGAGCAACCAGAAGAACCTCGGCACGAT 299924 Query 75979 CAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGT 76038 |||| |||| || | || || || || | ||||||| | | || ||| ||| || Sbjct 299923 CAAGTGCTCCAACTTGTGTACCGAGATCATCGAGTACAGCGCTCCCGACGAGGTGGCAGT 299864 Query 76039 TTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGA---AGAGACTCGCACTTT 76095 ||||| | || || ||||| || || | || ||| ||| || ||| || | Sbjct 299863 GTGCAACCTCGCCTCGATCGCACTGCCCACGT---TCATTGACCCAGTGACCAAGACGTA 299807 Query 76096 TGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCAT 76155 || | | | || || | | ||| | ||| || || ||| |||| Sbjct 299806 CGACTTTAAGCGTCTGCACAGCGTTGCCAAGGCCATCTGCAAGAACCTGAACAAGATCAT 299747 Query 76156 TGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTAT 76215 |||| || | ||||| || ||| ||||| ||||| || ||||| ||| | || || Sbjct 299746 CGACATTAACTACTATCCGGTCGAGGAGGCGCGCAAGTCCAACATGCGTCACCGTCCGAT 299687 Query 76216 TGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGATTC 76275 || | |||||||| || || ||||||| || || | | || || ||||| || Sbjct 299686 CGGGATCGGTGTTCAGGGCCTTGCGGATGCGTTCATGATCATGGGGTATGCGTTTGAGTC 299627 Query 76276 AGATGAAGCCAAGGAGA-TGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGG 76334 | | || | || || |||| | | |||||||| ||||| || ||||| | |||| Sbjct 299626 GGCCG-AGGCTCGGCGACTGAACGTGCAGATCTTTGAGACCATCTACCACGCCGCACTGG 299568 Query 76335 AGGCGA-GTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCC 76393 | |||| || || ||||||| || || ||| ||||| | | || || ||| Sbjct 299567 A-GCGATCGTGCGAGCTGGCTGAGCAGCACGGCAGCTACGAGACGTACGCCGGCTCGCCC 299509 Query 76394 GCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACC-AAGCTCAACTACGA 76452 || || || || | | | |||| || ||||||| ||| | || | | | || Sbjct 299508 GCTTCGCAGGGTGAGTTGCAGTACGACATGTGGG-GGGTCACGCCGTCGGACCTGTGGGA 299450 Query 76453 CTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGC 76512 ||||| | ||||||| ||| || | || ||||| ||| || || |||| Sbjct 299449 CTGGGCGGAGCTCAAGGCCAAGATCGCCAAGCACGGGCTTCGCAACTCGCTGCTGCTGGC 299390 Query 76513 ACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATA 76572 ||| ||||| || || || || || ||| |||| ||| || ||||| || || || Sbjct 299389 ACCGATGCCGACCGCTTCGACGAGTCAGATCCTGGGCTTTAACGAGTGCTTCGAGCCTTA 299330 Query 76573 CACAACAAACATCTAC 76588 || | ||||||||| Sbjct 299329 TACGTCCAACATCTAC 299314 >seq29 Length=43685 Score = 102 bits (112), Expect = 1e-16 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 65071 TTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTC 65130 ||||||||||| || | |||||||| || ||||| ||||| ||||| || |||||| Sbjct 30145 TTCGCCGAGCGTCTGGTCGCGTTTGCCGCCGTCGAGGGCATCTTTTTCTCGGGCTCATTC 30086 Query 65131 TGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAA 65190 | | || | ||| | |||||||| ||||||||||| || || ||||| || || Sbjct 30085 GCCTCGATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACGTTCTCCAACGAG 30026 Query 65191 CTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229 || || || || || |||||||| ||| ||| |||||| Sbjct 30025 CTCATCTCGCGTGACGAGGGTCTTCACACGGACTTTGCC 29987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569182401280