Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001599495.1_202016-03-01] 56 sequences; 19,606,871 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq21 214 2e-49 seq29 145 9e-29 seq2 125 9e-23 seq16 107 2e-17 seq1 86.0 8e-11 >seq21 Length=360673 Score = 214 bits (236), Expect = 2e-49 Identities = 282/393 (72%), Gaps = 15/393 (4%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||||||||||||||| |||| ||| |||||||||||||||||||| | ||||||| Sbjct 300328 CTGGTCGACGTAGCGCGCAGTGTTGTTGAAGACGCGGAGCATGGGCACAATGCCGTTGCT 300387 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 | ||||||||||| || | ||| | ||||| | | || | || | | ||| Sbjct 300388 GACACCGTTGGTGCCGGCAATGTACGAGCCGGTGCCACGGATGCAATGGATGTTGAGGCC 300447 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 |||||| ||||||| ||||||||| | || || ||||| || ||||||||||| || Sbjct 300448 GATGCCACCGGCCGTCTTGGAGATCATGGCACAAGTCTTGAGGGTATCGTAGATGCCGTC 300507 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 ||||||||| |||||||| || || |||||||||||| |||||||||| || || Sbjct 300508 GATCGAGTCATCCTTCATGGTAACAAGGAAGCACGACGAGAGCTGCGGGTGCGGGGTACC 300567 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 ||||||||||||||| |||| || ||| || ||| ||||||| || ||| || Sbjct 300568 GGCGTTGAAGAGCGTAGGCGAGGCGTGGGTAAAGTACTTTTGCGACATAAGGTTGTACGT 300627 Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424 ||| ||| | | | |||| | || | | ||||| ||||| Sbjct 300628 CTCGATGGCGCTCTCGA------TGTCCTGG---------CCGTGGATGCCGACAGCGAC 300672 Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGAC 1630457 ||||||||||||| |||||| ||||| |||| Sbjct 300673 TCGCATGAGCATGTGCTGGGGACGCTCTGCGAC 300705 Score = 116 bits (128), Expect = 5e-20 Identities = 289/444 (65%), Gaps = 10/444 (2%) Strand=Plus/Plus Query 1628162 ACTGGACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGG 1628221 ||| || ||||||||| |||| ||||| || | |||| || ||||||| ||||||| Sbjct 299889 ACTCGATGATCTCGGTACACAAGTTGGAGCACTTGATCGTGCCGAGGTTCTTCTGGTTGC 299948 Query 1628222 TGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCG 1628281 | | ||||| |||||||||||| || ||| | || ||| |||||| |||| | | Sbjct 299949 TCTTGCGGTTGGCGGCGTCCTTGTACAGGATGAAAGGGTTGCCCGTCTCGGTCTGTGACT 300008 Query 1628282 CGACGATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCG---CGCGCGGCCCTNNN 1628338 ||| |||||| |||||| || |||| ||| || || || ||| |||| Sbjct 300009 CGAGGATGGCGTACCAGAGCTTCTGCGC---TTTGACGGTGCGCTTCGAGCGACCCTCGG 300065 Query 1628339 NNNNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGGGCG 1628398 ||||| | | |||||||| ||| ||| || || Sbjct 300066 CCTCGTAGCGCTCGTAGAGGCGCTCAAACTCGTCACCGTAGCAGTCGGCCAGACCAGGGC 300125 Query 1628399 CCTCGGACGGACAAAAGAGCGACCAGTCGCC--ACCGGTCACCGCGCGGCGCATAAAGAG 1628456 |||| || || | ||||||||||||||| | | || | | | ||| ||||| Sbjct 300126 ACTCGTTGGGGCACATGAGCGACCAGTCGCCGTTCTGCTCGACCCTC--TTCATGAAGAG 300183 Query 1628457 GTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTT 1628516 ||| | ||| ||||| || ||||| || ||||| || ||||||||| |||||||| Sbjct 300184 ATCAGGCACCCAGAGTGCATAGAAGAGCTCACGCGCACGCACCTCCTCCTTTCCGTGGTT 300243 Query 1628517 CTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAA 1628576 ||| |||||||| | || | | ||| | |||||| || || | ||| ||||| Sbjct 300244 CTTGCGCAGGTCGAGGAACTCAAAGACGTCCGAGTGCCATGGTTCAATGTAAATAGCAAA 300303 Query 1628577 GGCGCCCTTGCGCTTGCCGCCGCC 1628600 ||| || |||||| ||| || Sbjct 300304 GGCACCGGGACGCTTGTTGCCACC 300327 >seq29 Length=43685 Score = 145 bits (160), Expect = 9e-29 Identities = 204/286 (71%), Gaps = 3/286 (1%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| ||||| || ||| | |||||| || | ||| ||||||||||| |||||||| Sbjct 30005 ACCCTCGTCACGCGAGATGAGCTCGTTGGAGAACGTGAGACCGGGCATGAGACCGCGCTT 30064 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||||||||| ||||| | | ||| ||||||||||||||||||||||||||||||||| Sbjct 30065 CTTGAGCCAGAAGATCGAGGCGAATGAGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 30124 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358 ||| || |||||||| || ||| | | || | | ||||||| | ||||| Sbjct 30125 CGCGACCAGACGCTCGGCGAAAGTGGC---ACGCTTGTCGCTGATCCATCGAAGAGCCCA 30181 Query 869359 GTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTC 869418 ||||||||| | | | || ||| | || |||| |||| ||| || | || | Sbjct 30182 GTCGGCCTTCTGCTTGACGACCGGGATGGTCTCGACGGCGTCAAACAGATATTCACGCTG 30241 Query 869419 GGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTCC 869464 | || || || || |||||||| || ||||| ||||||||| Sbjct 30242 CTCAGGCTCACGGATGTAAGTGTCGATGAGCAGCGAGTAGGTCTCC 30287 Score = 113 bits (124), Expect = 6e-19 Identities = 177/253 (70%), Gaps = 3/253 (1%) Strand=Plus/Plus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 |||||||||||||||| || ||||||||| ||||| ||| | |||| || | | Sbjct 30286 CCGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAACGAGCCTCGGCGGCCT 30345 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 | || ||| |||| || | | ||||||||| ||||| || || || |||| Sbjct 30346 GAACTTCCGAACTGAAACGCTCAACGAGGTTCTCGTTGACGATACCATCCGACGCAGCGA 30405 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGC---GACACCCAGT 869807 | || || || || ||| ||||||||||||||| | |||| | ||| |||||| Sbjct 30406 AGAACGCAAGCACATGCGAGATAAAGTGGCGCTCATTGTCGTTCAGCTTGTTGTCCCAGT 30465 Query 869808 GGACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTT 869867 | | ||| | ||||| | |||||| |||||||||| || ||||||||||| | Sbjct 30466 CGTGGAGGTCCTTGGAAAGGTCGATCTCCTCTGCGGTCCAGAAGGAAGCCTCGGCCTTCT 30525 Query 869868 TGTACATCTCCCA 869880 ||||||| | ||| Sbjct 30526 TGTACATTTGCCA 30538 Score = 107 bits (118), Expect = 2e-17 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 868798 TCCGAGCGACGCGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGC 868857 ||||||||| | |||| ||| ||||||||| |||| ||||| ||||||||||| | Sbjct 29798 TCCGAGCGATACCAGCAAGCGATCGGCGACATACTCAATGTATTGGCACATGAGCTTGCT 29857 Query 868858 GTTCATGCCGATGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGAC 868917 |||||| ||||||||||| || || | || |||| || ||| | ||||| || || || Sbjct 29858 GTTCATACCGATGAGCGCGACGGGGATTGATTCGCACAGGAACGCCTTCTCAATTTCCAC 29917 Query 868918 GGCCTCGACGATGATCT 868934 |||||| |||||||| Sbjct 29918 GGCCTCAGTGATGATCT 29934 >seq2 Length=1873563 Score = 125 bits (138), Expect = 9e-23 Identities = 116/146 (79%), Gaps = 1/146 (1%) Strand=Plus/Minus Query 19053 ATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGCCGTGC 19112 ||||| ||||| ||||| |||||| ||| |||||| |||| || || |||||||| Sbjct 1756687 ATCGGTGGCACAGTGACATGCGTGATCCGCGGTGTGCCGTCAGGGCTGGGAGAGCCGTGT 1756628 Query 19113 TTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGGGA 19172 || |||||| |||||||| ||| || ||||||||||| |||||||| |||||||| Sbjct 1756627 TTCGACAAGCTCGAGGCCAAGCTGGCGCACGCCATGCTCAGCATCCCGGCAACCAAGGGG 1756568 Query 19173 TTCGAGATTGGCAGCGGGTTTGCGGG 19198 |||||||| ||| ||||||| |||| Sbjct 1756567 TTCGAGATCGGC-TCGGGTTTCCGGG 1756543 Score = 109 bits (120), Expect = 7e-18 Identities = 264/396 (67%), Gaps = 8/396 (2%) Strand=Plus/Minus Query 18082 TTTAGGGTCACCACCTTTGGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGC 18141 ||| | |||||||| | |||||||||||| | || || || || ||| |||| ||| Sbjct 1757497 TTTCGCGTCACCACGTACGGCGAGTCGCACTGCGCCTCGGTAGGTTGTATCGTCGATGGC 1757438 Query 18142 GTGCCGCCGTGCATGCCACTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGA 18201 ||||| ||| ||||| |||| || | | |||||| ||| | ||| | || || || Sbjct 1757437 GTGCCTCCGGGCATGGCACTCGCTGCGCACGACATTCAGACGCAGCTCTCACGTCGTCGG 1757378 Query 18202 CCGGGCCAGGGCGCACTT-TCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTC 18260 |||||||| | || | || | ||||||||| | || || || ||| ||||| || Sbjct 1757377 CCGGGCCA-GTCGAATTTGACGACGCCGCGCGATGAAAAGGACCGTGTCGAGATCCAATC 1757319 Query 18261 GGGCACGGAGAACGGCCTCACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGA 18320 ||| || |||| | ||||| ||| |||| ||| | | | || ||||| || Sbjct 1757318 GGGTGTCGAACGCGGCGTGACGCTGGGCACGCCGATCGCCATGCTGGTACGCAACCAGGA 1757259 Query 18321 CCAGCGGCCCGTCGACTATTCCGAC-ATGTGC-----AAGGTGCCGCGGCCCTCACACGC 18374 ||||| || |||||| | ||| || || | | || || || || ||||| Sbjct 1757258 TCAGCGTCCACACGACTACACGGACGATACGCTGGATACGTATCCACGCCCTTCGCACGC 1757199 Query 18375 CGACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTC 18434 ||||| || || ||| |||||| | ||||||| |||||||| || || || Sbjct 1757198 CGACTTTACGTATCTGGAAAAGTACAACGTCAAGGCAAGCTCGGGCGGTGGAAGGAGCTC 1757139 Query 18435 TGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGC 18470 || || |||||| | || ||||| || ||||| Sbjct 1757138 GGCTCGTGAGACCATTGGACGAGTCGCTGCGGGCGC 1757103 >seq16 Length=557755 Score = 107 bits (118), Expect = 2e-17 Identities = 136/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 507703 CACCATGCGATTCAACCTGGCCGTCACGGGCACCTACAACGCCGACTTTGACGGCGACGA 507762 |||| | || ||||||| |||||| |||||||||||||||||||||| ||||| Sbjct 535203 CACCTTCCGTCTCAACCTCAGTGTCACGCCTCCCTACAACGCCGACTTTGACGGTGACGA 535262 Query 507763 GATGAACCTGCACGTGCCCCAGTCCGAGACGGCGCGCGCCGAGGTGACGCACACCATGAG 507822 ||||||| |||||||||| ||| || | | || |||||| | |||| | | | Sbjct 535263 GATGAACTTGCACGTGCCACAGAGTGAAGAGACCCGTGCCGAGCTCTCGCAGATCGCCTG 535322 Query 507823 CGTGTCGCTCAAGACCGTGTCGCCGCAGGCCAACAAGCCCATCATCGGCCTGGTCATGGA 507882 || ||| | ||| || ||||| ||||||||||||||| |||| ||| | || ||| Sbjct 535323 GGTCCCGCGCCAGATTGTCTCGCCTCAGGCCAACAAGCCCGTCATGGGCATTGTGCAGGA 535382 Query 507883 CGCCCTC 507889 | | ||| Sbjct 535383 CACGCTC 535389 >seq1 Length=2501896 Score = 86.0 bits (94), Expect = 8e-11 Identities = 153/221 (69%), Gaps = 12/221 (5%) Strand=Plus/Minus Query 1573932 TGTCTGGCGCGTGTCCTCTTGGGCGCGGCCGCCGACGAGGCCGTGCTCGAACTCAACGCG 1573991 ||||| || |||| || |||||| || | | |||| ||||||||||||||||| Sbjct 326507 TGTCTTGCTCGTGCGCTGCTGGGCGAAGCATACAAAGAGGGTGTGCTCGAACTCAACGCT 326448 Query 1573992 TCGGACGAGCGCGGCGTCGACGTCGTGCGCAAGATCATCAAGCACCACGCCTCC----AA 1574047 || ||||| || || ||||| || || || || | |||||| ||| | | || Sbjct 326447 TCCGACGAACGAGGTGTCGATGTGGTTCGAAACAAGATCAAG----ACGTTTGCGCAAAA 326392 Query 1574048 G--AGGATCGACCTGCCGCCCGGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGC 1574105 | || ||| || || |||||| | || ||| | ||||||||||||||||| || | Sbjct 326391 GAAAGTGTCG--CTCCCACCCGGAAGGCATAAGATCATCATCCTCGACGAGGCGGATAGT 326334 Query 1574106 CTCACGTCGGCGGCCCAGCAGGCCCTGCGGTCCACCATGGA 1574146 | || | || || || ||||| ||||| |||||||| Sbjct 326333 ATGACTCCTGCTGCGCAACAGGCGCTGCGAAGGACCATGGA 326293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107134604377752