Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001599495.1_202016-03-01] 56 sequences; 19,606,871 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq21 190 3e-42 seq29 183 5e-40 seq16 104 4e-16 seq1 87.8 3e-11 >seq21 Length=360673 Score = 190 bits (210), Expect = 3e-42 Identities = 278/393 (71%), Gaps = 15/393 (4%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||||||||| |||||||| |||| ||| |||||||||||||||||||||| ||||||| Sbjct 300328 CTGGTCGACGTAGCGCGCAGTGTTGTTGAAGACGCGGAGCATGGGCACAATGCCGTTGCT 300387 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 | ||||||||||| || | ||| | ||| | | | || | || | | ||| Sbjct 300388 GACACCGTTGGTGCCGGCAATGTACGAGCCGGTGCCACGGATGCAATGGATGTTGAGGCC 300447 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 |||||| ||||||| ||||||||| | || || | || || || ||||||||||| || Sbjct 300448 GATGCCACCGGCCGTCTTGGAGATCATGGCACAAGTCTTGAGGGTATCGTAGATGCCGTC 300507 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 ||||||||| |||||||| | || |||||||||||| |||||| ||| || || Sbjct 300508 GATCGAGTCATCCTTCATGGTAACAAGGAAGCACGACGAGAGCTGCGGGTGCGGGGTACC 300567 Query 2073780 GGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTAGGT 2073839 ||| ||||||||||| |||| || || | ||| ||| ||||| | ||| || Sbjct 300568 GGCGTTGAAGAGCGTAGGCGAGGCGTGGGTAAAGTACTTTTGCGACATAAGGTTGTACGT 300627 Query 2073840 GGCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGCGAC 2073899 ||| ||| | | | ||| ||| ||| | || ||||| ||||| Sbjct 300628 CTCGATGGCGCTCTCGA---TGTCCTGGCCGTGG--------AT----GCCGACAGCGAC 300672 Query 2073900 GCGCATGATCATGTACTGGGGTCGCTCGACGAC 2073932 ||||||| ||||| |||||| ||||| |||| Sbjct 300673 TCGCATGAGCATGTGCTGGGGACGCTCTGCGAC 300705 Score = 134 bits (148), Expect = 2e-25 Identities = 292/441 (66%), Gaps = 4/441 (1%) Strand=Plus/Plus Query 2071574 ACTGGACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGC 2071633 ||| || || |||||| |||| ||||| || | | ||||| ||||||| |||||||| Sbjct 299889 ACTCGATGATCTCGGTACACAAGTTGGAGCACTTGATCGTGCCGAGGTTCTTCTGGTTGC 299948 Query 2071634 TGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCG 2071693 | | ||||| |||||||||||| ||| ||| | || ||||||||| |||| | | Sbjct 299949 TCTTGCGGTTGGCGGCGTCCTTGTACAGGATGAAAGGGTTGCCCGTCTCGGTCTGTGACT 300008 Query 2071694 TGACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAGGTCCTCGCGCGGCCCTNNNNNN 2071753 || |||||| |||| | | |||| || | | | ||| ||| |||| Sbjct 300009 CGAGGATGGCGTACCAGAGCTTCTGCGCTTTGACGGTGCGCTTCGAGCGACCCTCGGCCT 300068 Query 2071754 NNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGGCGCCT 2071813 ||||| ||||| || | |||| ||| ||| ||| || || || Sbjct 300069 CGTAGCGCTCGTAGAGGCGCTCAAACTCGTCACCGTAGCAGTCGGCCAGACCAGGGCACT 300128 Query 2071814 CGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAGGTC-- 2071871 || ||||| | |||||||||||||||| | | || | ||| || || || Sbjct 300129 CGTTGGGGCACATGAGCGACCAGTCGCCGTTCTGCTCGACCCTCTTCATGAAGAGATCAG 300188 Query 2071872 GCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTT 2071931 |||| ||| || | || ||||| || ||||| || ||||||||| ||||||||||| Sbjct 300189 GCAC--CCAGAGTGCATAGAAGAGCTCACGCGCACGCACCTCCTCCTTTCCGTGGTTCTT 300246 Query 2071932 TTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGC 2071991 ||||||||| | || | || ||| | |||||| || || | ||| |||||||| Sbjct 300247 GCGCAGGTCGAGGAACTCAAAGACGTCCGAGTGCCATGGTTCAATGTAAATAGCAAAGGC 300306 Query 2071992 GCCCTTGCGCTTGCCGCCGCC 2072012 || |||||| ||| || Sbjct 300307 ACCGGGACGCTTGTTGCCACC 300327 >seq29 Length=43685 Score = 183 bits (202), Expect = 5e-40 Identities = 237/327 (72%), Gaps = 3/327 (1%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| ||||| || ||| | |||||| || ||| ||||||||||| |||||||| Sbjct 30005 ACCCTCGTCACGCGAGATGAGCTCGTTGGAGAACGTGAGACCGGGCATGAGACCGCGCTT 30064 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||||||||| ||||| | ||| ||||||||||||||||||||||||||||||||| Sbjct 30065 CTTGAGCCAGAAGATCGAGGCGAATGAGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 30124 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 |||| || |||||||| |||||| | | || | | ||||||| | ||||| Sbjct 30125 CGCGACCAGACGCTCGGCGAAAGTGGC---ACGCTTGTCGCTGATCCATCGAAGAGCCCA 30181 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTC 794579 || ||||| | | | || || | || |||| |||| ||| || | || || Sbjct 30182 GTCGGCCTTCTGCTTGACGACCGGGATGGTCTCGACGGCGTCAAACAGATATTCACGCTG 30241 Query 794580 GACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTC 794639 | || || || ||| ||||||||||| |||||||||||||| ||||||||||| || Sbjct 30242 CTCAGGCTCACGGATGTAAGTGTCGATGAGCAGCGAGTAGGTCTCCGAGTGGATGTTCTC 30301 Query 794640 GATGGCGATCTGGAAGCCATAAAAGCA 794666 || ||||||||| || || ||||| Sbjct 30302 CATCATGATCTGGAAACCGTAGAAGCA 30328 Score = 105 bits (116), Expect = 1e-16 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 794007 CCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCG 794066 |||||||| | |||| ||| |||||||| | |||||||| ||||||||||| | | Sbjct 29799 CCGAGCGATACCAGCAAGCGATCGGCGACATACTCAATGTATTGGCACATGAGCTTGCTG 29858 Query 794067 TTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACG 794126 ||||| ||||||||||| ||||| | || |||| | ||| | ||||| || || ||| Sbjct 29859 TTCATACCGATGAGCGCGACGGGGATTGATTCGCACAGGAACGCCTTCTCAATTTCCACG 29918 Query 794127 GCCTCGATGATGATCT 794142 ||||| ||||||||| Sbjct 29919 GCCTCAGTGATGATCT 29934 Score = 86.0 bits (94), Expect = 1e-10 Identities = 122/171 (71%), Gaps = 3/171 (2%) Strand=Plus/Plus Query 796189 AGGTTCTCAGCCACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAG 796248 |||||||| ||||| || || || ||||| || || || || ||| ||||||| Sbjct 30372 AGGTTCTCGTTGACGATACCATCCGACGCAGCGAAGAACGCAAGCACATGCGAGATAAAG 30431 Query 796249 TGACGCTCGTCGTCGCTGAGCGAGA---CCCAGTGGACCGTGTCGGCGCCGAGGTCGACC 796305 || ||||| | |||| | ||| | |||||| | ||| | ||||||| | Sbjct 30432 TGGCGCTCATTGTCGTTCAGCTTGTTGTCCCAGTCGTGGAGGTCCTTGGAAAGGTCGATC 30491 Query 796306 TCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATC 796356 ||||| |||||||| ||||| ||||||||||| |||||||| | ||| ||| Sbjct 30492 TCCTCTGCGGTCCAGAAGGAAGCCTCGGCCTTCTTGTACATTTGCCAAATC 30542 >seq16 Length=557755 Score = 104 bits (114), Expect = 4e-16 Identities = 135/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 429632 CACCTTCCGGCTCAACCTGGCCGTGACGGGCACCTACAACGCCGACTTTGACGGCGACGA 429691 ||||||||| |||||||| || ||| |||||||||||||||||||||| ||||| Sbjct 535203 CACCTTCCGTCTCAACCTCAGTGTCACGCCTCCCTACAACGCCGACTTTGACGGTGACGA 535262 Query 429692 GATGAACCTGCACGTGCCCCAGTCGGAGATGGCACGCGCCGAAGTCGCCCACACCATGGG 429751 ||||||| |||||||||| ||| || | | || ||||| || | || | | | Sbjct 535263 GATGAACTTGCACGTGCCACAGAGTGAAGAGACCCGTGCCGAGCTCTCGCAGATCGCCTG 535322 Query 429752 CGTGGCCCTCAAGGCCGTGTCGCCGCAGGCCAACAAGCCCATCATCGGGCTCGTGATGGA 429811 || | | | || || ||||| ||||||||||||||| |||| || | ||| ||| Sbjct 535323 GGTCCCGCGCCAGATTGTCTCGCCTCAGGCCAACAAGCCCGTCATGGGCATTGTGCAGGA 535382 Query 429812 CGCCCTC 429818 | | ||| Sbjct 535383 CACGCTC 535389 >seq1 Length=2501896 Score = 87.8 bits (96), Expect = 3e-11 Identities = 262/390 (67%), Gaps = 26/390 (7%) Strand=Plus/Minus Query 2019003 GACGGCAACATGCCCAACCTCTTGCTGGCGGGCCCGCCCGGCACGGGCAAGACCACGAGC 2019062 ||||||||| || |||| | | |||| | ||||| | ||||| || ||| Sbjct 326573 GACGGCAACTGTCCGCACCTGCTCATCTCGGGACTTCCCGGGATCGGCAAAACTACG--- 326517 Query 2019063 ATCGCGTGC-CTGGC--GCGCGTGCTCT--TGGGCGCGGCCGCCGACGAGGCCGTGCTCG 2019117 ||| |||| ||| | || ||||| || |||||| || | | |||| ||||||| Sbjct 326516 -TCG-GTGCTCTGTCTTGCTCGTGCGCTGCTGGGCGAAGCATACAAAGAGGGTGTGCTCG 326459 Query 2019118 AACTCAATGCGTCAGACGAGCGCGGCGTGGACGTCGTGCGTAGAATCATCAAGCATCACG 2019177 ||||||| || || ||||| || || || || || || || | | |||||| ||| Sbjct 326458 AACTCAACGCTTCCGACGAACGAGGTGTCGATGTGGTTCGAAACAAGATCAAG----ACG 326403 Query 2019178 CTT-CG-AAAAGAA----TCGACCTGCCGCCCGGCCGCCACAAGGTGATCATCCTCGATG 2019231 || || ||||||| ||| || || ||||| | || ||| | ||||||||||| | Sbjct 326402 TTTGCGCAAAAGAAAGTGTCG--CTCCCACCCGGAAGGCATAAGATCATCATCCTCGACG 326345 Query 2019232 AGGCCGACTGCCTTACGTCGGCGGCCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACA 2019291 |||| || | | || | || || || ||||| || ||| ||||||||| | ||| Sbjct 326344 AGGCGGATAGTATGACTCCTGCTGCGCAACAGGCGCTGCGAAGGACCATGGAGATCTACT 326285 Query 2019292 CCAACACGACGCGGTT-TGCGCTGGCCTGCAA-CACGTCGTCGATGGTCATCGAAGCCCT 2019349 | || || || |||| ||| | || ||||| || | | | |||||||| || | Sbjct 326284 CGAATACTACCAGGTTCTGC-TTCGCTTGCAATCAGAGCAAC-AAAATCATCGAACCCAT 326227 Query 2019350 CCAGAGCCGTTGCGCCATCTTGCGCTTTGC 2019379 |||| || || |||||||| || | ||| Sbjct 326226 CCAGTCGCGCTGTGCCATCTTACGGTATGC 326197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916240443024584