Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001599495.1_202016-03-01] 56 sequences; 19,606,871 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq2 86.0 5e-11 >seq2 Length=1873563 Score = 86.0 bits (94), Expect = 5e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || || ||||| || || | |||||||| || || || || | |||| || || Sbjct 465643 TTCTTGTCGAGACCGTAAGCGATGGCAGCAGCGGTAGGCTCGTTGACGATTCGCAGCACG 465702 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 ||||||||||| || | || ||||| |||||||| |||| || | ||||| ||||| Sbjct 465703 TTAAGACCAGCGATGGTGCCAGCATCCTTAGTGGCCTGTCGCTGAGCGTCGTTGAAATAG 465762 Query 282452 GCAGGAACAGTAATAACGGC 282471 || ||||| || | |||||| Sbjct 465763 GCGGGAACGGTGACAACGGC 465782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740627650636656