Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001599495.1_202016-03-01] 56 sequences; 19,606,871 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq21 179 4e-40 seq10 84.2 2e-11 >seq21 Length=360673 Score = 179 bits (198), Expect = 4e-40 Identities = 624/961 (65%), Gaps = 21/961 (2%) Strand=Plus/Plus Query 147460 GCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCG 147519 ||||| || || || ||||| || ||| ||| |||| ||||||||| | ||| ||| Sbjct 299843 GCGATCGAGGCGAGGTTGCACACTGCCACCTCGTCGGGAGCGCTGTACTCGATGATCTCG 299902 Query 147520 GCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCAC 147579 | |||| |||| ||| || || || | || | ||| ||||| || || ||| Sbjct 299903 GTACACAAGTTGGAGCACTTGATCGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCG 299962 Query 147580 GCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGATAAACCTA 147639 ||||| ||| | || ||| | || ||| |||||| || | || | ||| | || Sbjct 299963 GCGTCCTTGTACAGGATGAAAGGGTTGCCCGTCTCGGTCTGTGACTCGAGGATGG-CGTA 300021 Query 147640 TGC-AGGTCCTGCGCTCGCACCCGCTGCCGAT--AGCGGCCCTCGTTTTCGTACCGCTCG 147696 || | ||||||| || | ||| | |||| |||||| ||||| |||||| Sbjct 300022 CCAGAGCTTCTGCGCTTTGAC--GGTGCGCTTCGAGCGACCCTCGGCCTCGTAGCGCTCG 300079 Query 147697 TACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACAC 147756 || | |||||||||||||| |||||||| ||||| || || || |||| | || ||| Sbjct 300080 TAGAGGCGCTCAAACTCGTCACCGTAGCAGTCGGCCAGACCAGGGCACTCGTTGGGGCAC 300139 Query 147757 ATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGC 147816 || |||||||| | ||| | | || | ||| || ||||| |||||||| || Sbjct 300140 ATGAGCGACCAGTCGCCGTTCTGCTCGACCCTCTTCATGAAGAGATCAGGCACCCAGAGT 300199 Query 147817 GCGTACATAAGATCGCGCGCTTTGCA----ATCCTCGGCGCCCATGTTGCGTTTCAAATT 147872 || || | || || ||||| ||| |||| || | ||||| || | Sbjct 300200 GCATAGAAGAGCTCACGCGC-ACGCACCTCCTCCTTTCCGTGGTTCTTGCG---CAGGTC 300255 Query 147873 AAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACG 147932 || | | ||| ||| | |||||| ||||||||||| | || | ||||| ||| Sbjct 300256 GAGGAACTCAAAGACGTCCGAGTGCCATGGTTCAATGTAAATAGCAAAGGCACCGGGACG 300315 Query 147933 C---TTTCCGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTC 147989 | || || ||||||||||| | |||| | ||||||| || ||||| | |||||| | Sbjct 300316 CTTGTTGCCACCCTGGTCGACGTAGCGCGCAGTGTTGTTGAAGACGCGGAGCATGGGCAC 300375 Query 147990 CAGGCCGCTCGCAG-TGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGT 148048 | |||| | || | ||||||||| || | |||| | | || | | Sbjct 300376 AATGCCG-TTGCTGACACCGTTGGTGCCGGCAATGTACGAGCCGGTGCCACGGATGCAAT 300434 Query 148049 GCACGTTAACGCCAATGCCGCC-GCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTC 148107 | | ||| | ||| ||||| || ||||| ||| || || || ||| | || Sbjct 300435 GGATGTTGAGGCCGATGCCACCGGCCGT-CTTGGAGATCATGGCACAAGTCTTGAGGGTA 300493 Query 148108 GTGTAGATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGC 148167 ||||||||||||||| ||| | || | | || | || ||||| | | ||| Sbjct 300494 TCGTAGATGCCGTCGATCGAGTCATCCTTCATGGTAACAAGGAAGCACGACGAGAGCTGC 300553 Query 148168 GGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTC 148227 || | | || || || ||| || || || ||||| ||||| | ||||| | Sbjct 300554 GGGTGCGGGGTACCGGCGTTGAAGAGCGTAGGCGAGGCGTGGGTAAAGTACTTTTGCGAC 300613 Query 148228 ATCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACG 148287 || | | |||||||| || ||| |||||||| | |||||| ||||| | ||||| Sbjct 300614 ATAAGGTTGTACGTCTCGATGGCGCTCTCGATGTCCTGGCCGTGGATGCCGACAGCGACT 300673 Query 148288 CGCATGAGCATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCA 148347 ||||||||||||||||| || || || || || | |||||| ||| | ||| | Sbjct 300674 CGCATGAGCATGTGCTGGGGACGCTCTGCGACCTTGCCGTTGATGCGGAGCAAATAGGAA 300733 Query 148348 TTTTCGAGGGTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGCC 148407 ||||| || ||| | || || | ||||| | || || | ||||| ||||||| Sbjct 300734 CGCTCGAGCGTCTTGAAGCCGAAAAAGTTGTAGTGGAAGTCACGTTCGTAGATGATGGCC 300793 Query 148408 G 148408 | Sbjct 300794 G 300794 >seq10 Length=589446 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| ||||||||||||||| | || || ||||||||||| ||||| | Sbjct 214658 GACTCTTTCTGAATGTTGTAGTCGGAGAGCGTTCGGCCGTCTTCGAGCTGCTTACCAGCG 214599 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| ||||| ||||| |||||||| || || || || || | Sbjct 214598 AAGATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACG 214539 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | | ||| ||||||| || | || || || || || || || Sbjct 214538 TTGTCGATGGTGTCCGAGGACTCGACTTCGAGAGTAATGGTCTTGCCCGTGAGCGTCTTA 214479 Query 132110 ATGAAAATCTGCAT 132123 | ||||||||||| Sbjct 214478 ACAAAAATCTGCAT 214465 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || || |||||||||||||| || || || |||||||||||| || |||| | Sbjct 214886 GATTCCTTCTGAATGTTGTAGTCCGACAGAGTGCGACCATCTTCGAGCTGCTTGCCGGCA 214827 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 |||| |||||||| ||||| ||||| |||||||| || || Sbjct 214826 AAGATAAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTC 214786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476610866372160