Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001599495.1_202016-03-01] 56 sequences; 19,606,871 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq29 242 5e-58 seq21 183 4e-40 seq3 93.3 6e-13 seq16 91.5 2e-12 >seq29 Length=43685 Score = 242 bits (268), Expect = 5e-58 Identities = 363/509 (71%), Gaps = 10/509 (2%) Strand=Plus/Minus Query 1455772 GCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCG 1455831 || ||| ||| |||||||| || ||||||||||| ||||| |||||||| |||||| ||| Sbjct 30545 GCAGATTTGGCAAATGTAC-AAGAAGGCCGAGGCTTCCTTCTGGACCGCAGAGGAGATCG 30487 Query 1455832 ACCTCGGCGCCGACACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTCA 1455888 |||| | ||| | |||||| ||||| |||| | |||||||| || | Sbjct 30486 ACCTTTCCAAGGACCTCCACGACTGGGACAACAAGCTGAACGACAATGAGCGCCACTTTA 30427 Query 1455889 TCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCC 1455948 || ||| || || || || || ||| || ||||| ||||| ||||||||| | Sbjct 30426 TCTCGCATGTGCTTGCGTTCTT-CGCTGCGTCGGATGGTATCGTCAACGAGAACCTCGTT 30368 Query 1455949 GGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATC 1456008 | || || | || || || | ||||| |||| || ||||| ||||||||| Sbjct 30367 GAGCGTTTCAGTTCGGAAGTTCAGGCCGCCGAGGCTCGTTGCTTCTACGGTTTCCAGATC 30308 Query 1456009 GCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGAC 1456068 || || ||||||||||| || ||||||||||| || |||||||| ||| || || Sbjct 30307 ATGATGGAGAACATCCACTCGGAGACCTACTCGCTGCTCATCGACACTTACATCCGTGAG 30248 Query 1456069 CCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAG 1456128 || | || || | || ||| |||| |||| || | ||| || | | | ||| Sbjct 30247 CCTGAGCAGCGTGAATATCTGTTTGACGCCGTCGAGACCATCCCGGTCGTCAAGCAGAAG 30188 Query 1456129 GCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTT-GCCGAGCGGCTC 1456187 ||||||||||| | ||||||| | | || | | |||||| |||||||| || Sbjct 30187 GCCGACTGGGCTCTTCGATGGATCAGCGACAAGCGT---GCCACTTTCGCCGAGCGTCTG 30131 Query 1456188 GTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGG 1456246 |||| |||||||| |||||||||||||||||||||||| ||| | | ||||| ||| Sbjct 30130 GTCGCGTTTGCCGCCGTCGAGGGCATCTTTTTCTCGGGCTCATTCGCCTCGATCTTCTGG 30071 Query 1456247 CTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 |||||||||||||| |||||||||||||| Sbjct 30070 CTCAAGAAGCGCGGTCTCATGCCCGGTCT 30042 Score = 93.3 bits (102), Expect = 6e-13 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 1456521 AGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGG 1456580 |||||||| |||||||| || || ||||| | ||| | |||| || | || || | Sbjct 29934 AGATCATCACTGAGGCCGTGGAAATTGAGAAGGCGTTCCTGTGCGAATCAATCCCCGTCG 29875 Query 1456581 CGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCG 1456640 |||||||||| |||||| || |||||||||||| ||||||| | | ||||||||| || Sbjct 29874 CGCTCATCGGTATGAACAGCA-AGCTCATGTGCCAATACATTG-AGTATGTCGCCGATCG 29817 Query 1456641 CCTGCTCGCGGCGCTCGG 1456658 | |||| | ||||||| Sbjct 29816 CTTGCTGGTATCGCTCGG 29799 >seq21 Length=360673 Score = 183 bits (202), Expect = 4e-40 Identities = 218/292 (75%), Gaps = 8/292 (3%) Strand=Plus/Minus Query 259895 ATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGC 259954 |||||||| ||| || ||| || |||| |||||||| || ||||| || |||| | Sbjct 300615 ATGTCGCAAAAGTACTTTACCCACGCCTCGCCTACGCTCTTCAACGCCGGTACCCCGCAC 300556 Query 259955 CCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTAT 260014 |||||| ||||||||||| || | |||||||| || |||||||| |||||||| Sbjct 300555 CCGCAGCTCTCGTCGTGCTTCCTTGTTACCATGAAGGATGACTCGATCGACGGCATCTAC 300496 Query 260015 GACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCA 260074 || || |||||| || || | ||||||||| ||||||| |||||||| | | || Sbjct 300495 GATACCCTCAAGACTTGTGCCATGATCTCCAAGACGGCCGGTGGCATCGGCCT--CAACA 300438 Query 260075 CACAAGG--TGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACG--GCCAGTCCAACGG 260130 || | | || | | | ||| | ||| | || |||||||||| | ||| |||||| Sbjct 300437 TCCATTGCATCCGTGGCACCGGCTCGTACATTGCCGGCACCAACGGTGTCAG--CAACGG 300380 Query 260131 CCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 | ||||||||||||| ||||| || ||| |||| |||||||||||||||||| Sbjct 300379 CATTGTGCCCATGCTCCGCGTCTTCAACAACACTGCGCGCTACGTCGACCAG 300328 Score = 89.7 bits (98), Expect = 7e-12 Identities = 144/203 (71%), Gaps = 8/203 (4%) Strand=Plus/Minus Query 262092 AGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTACA 262151 || |||||| ||||| ||| | | || | |||||| |||| || | ||| | |||| Sbjct 300029 AGCTCTGGTACGCCATCCTCGAGTCACAGACCGAGACGGGCAACCCTTTCATCCTGTACA 299970 Query 262152 AGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAG-GCCAAC 262210 ||||||||| ||||| | ||||||||| ||||||| ||||| | | || | ||||| Sbjct 299969 AGGACGCCGCCAACCGCAAGAGCAACCAGAAGAACCTCGGCACGATCA-AGTGCTCCAAC 299911 Query 262211 CTGTGCACCGAGATCGTCCAGTTTTCGTCGCCCACCGAGGCAAGTGTGTGCAACCT---C 262267 |||| ||||||||| || ||| | ||| ||||| ||||||||||| | Sbjct 299910 TTGTGTACCGAGATCATCGAGTACAGCGCTCCCGACGAGGTGGCAGTGTGCAACCTCGCC 299851 Query 262268 TCGAGCGTGGCCCTGCCCAAGTT 262290 |||| | || ||||||| ||| Sbjct 299850 TCGA---TCGCACTGCCCACGTT 299831 >seq3 Length=1579684 Score = 93.3 bits (102), Expect = 6e-13 Identities = 170/246 (69%), Gaps = 10/246 (4%) Strand=Plus/Minus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 |||||| ||| |||||| |||||||||||||| ||||| || | | ||| Sbjct 1382477 TACTCGACCTACATCTACCGTGTGCTCAAGCAGGTTCACCCTGACACTGGT-----ATC- 1382424 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 || |||||| ||||| | || | |||||||| ||| | ||||| | || ||||||| Sbjct 1382423 TCGAACAAGGCCATGGCCATTCTTAACTCGTTCGTCCAGGACATCTTTGAGCGCATCGCA 1382364 Query 725019 ACCGAGGCCGGTCGC--CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGA 725076 || ||||| |||| || || | ||||||| || ||| |||| |||| Sbjct 1382363 ACTGAGGC--GTCGAAGCTCGCTTCGTACAACAAGAAGTCGACCATCTCGTCGCGAGAGA 1382306 Query 725077 TCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGG 725136 ||||||| || || ||||| || | | ||| || || ||| ||||||| |||| || | Sbjct 1382305 TCCAGACGGCTGTCCGCCTCATTCTTCCCGGTGAGCTTTCCAAGCACGCCATCTCGGAAG 1382246 Query 725137 GCACCA 725142 | |||| Sbjct 1382245 GTACCA 1382240 >seq16 Length=557755 Score = 91.5 bits (100), Expect = 2e-12 Identities = 130/182 (71%), Gaps = 1/182 (1%) Strand=Plus/Minus Query 1817472 ACCGACGAGGGCGTCCATGACCAGGCCGATGATGGGCTTGTTGGCCTGCGGCGACACGGT 1817531 |||| ||| | |||| || | ||| |||| ||||||||||||||| ||||| || | Sbjct 535395 ACCGCAGAGCGTGTCCTGCACAATGCCCATGACGGGCTTGTTGGCCTGAGGCGAGACAAT 535336 Query 1817532 CTTGAGGGCCACGTTCATGGTGTGCGTCACCTCGGCGCGCGCGTCT-CAGACTGGGGCAC 1817590 || | | | || | | |||| | |||||| || | ||| || ||| ||||| Sbjct 535335 CTGGCGCGGGACCCAGGCGATCTGCGAGAGCTCGGCACGGGTCTCTTCACTCTGTGGCAC 535276 Query 1817591 ATGGAGGTTCATCTCGTCGCCGTCAAAGTCGGCATTGTAGGTGCCCGTGACGGCCAGGTT 1817650 || | |||||||||||| |||||||||||||| ||||||| |||||| ||||| Sbjct 535275 GTGCAAGTTCATCTCGTCACCGTCAAAGTCGGCGTTGTAGGGAGGCGTGACACTGAGGTT 535216 Query 1817651 GA 1817652 || Sbjct 535215 GA 535214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177805798697072