Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001599495.1_202016-03-01] 56 sequences; 19,606,871 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq10 122 7e-23 seq4 87.8 2e-12 >seq10 Length=589446 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||| | |||||||| | || | ||| || ||||| ||||| ||||||||| Sbjct 214691 CCACCGCGGAGTCGCAATACAAGGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCGGAG 214632 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || ||||||||||||| ||||| ||| | ||||||||||| ||||| || || Sbjct 214631 AGCGTTCGGCCGTCTTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCAGGAGGA 214572 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || || || ||||||| || | | | || | ||||| | || || ||| Sbjct 214571 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTCGACT 214512 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| || | |||||||| || || || ||||| || ||||| Sbjct 214511 TCGAGAGTAATGGTCTTGCCCGTGAGCGTCTTAACAAAAATCTGCAT 214465 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 |||||| || | || | ||||| || | || || || || ||||| |||||||| Sbjct 214920 GCCTCCACGAAGACGAAGGACCAAGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCCGA 214861 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 || |||| | ||||||||||| || ||||| | || |||||||| ||||| || || Sbjct 214860 CAGAGTGCGACCATCTTCGAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGATCAGGAGG 214801 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | || || || || ||||||| || | | | || | ||||| | | || || Sbjct 214800 AATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGAC 214741 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||| ||||| || | ||||| || || || || |||||||| |||||| Sbjct 214740 TTCGAGAGTGATGGTCTTGCCTGTGAGCGTCTTGACAAAGATCTGCATA 214692 >seq4 Length=1388522 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| ||||| ||||| ||| | ||||||||||| || || || || | |||||| || Sbjct 154551 TCTTCAAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGGGGAATACCCTCCTTG 154610 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||||||| || | | || | ||||| | | || || || || || || Sbjct 154611 TCCTGGATCTTGGCCTTGACATTGTCGATTGTGTCGGAAGACTCCACCTCAAGGGTGATC 154670 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGC 27250 | ||||| |||||||| || |||||||||||||| || Sbjct 154671 GTCTTGCCGGTCAGAGTCTTGACAAAGATTTGCATGGC 154708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424934109982272