Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001599495.1_202016-03-01] 56 sequences; 19,606,871 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq21 228 1e-54 seq29 104 3e-17 >seq21 Length=360673 Score = 228 bits (252), Expect = 1e-54 Identities = 899/1395 (64%), Gaps = 33/1395 (2%) Strand=Plus/Plus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||||||||| | || || || || ||||| || ||| |||| ||| || || || Sbjct 299314 GTAGATGTTGGACGTATAAGGCTCGAAGCACTCGTTAAAGCCCAGGATCTGACTCGTCGA 299373 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826 || || ||||| ||||||| || || ||| ||||| || | || ||| | Sbjct 299374 AGCGGTCGGCATCGGTGCCAGCAGCAGCGAGTTGCGAAGCCCGTGCTTGGCGATCTTGGC 299433 Query 110827 CTTGAGAACATCCCAGTCGTAGTTGAGCTT-GGTTTCACCTTCCCACATGTCAAACTGAA 110885 |||||| | ||||||| | | | || | ||| |||||||||| |||| | Sbjct 299434 CTTGAGCTCCGCCCAGTCCCACAGGTCCGACGGCGTGACCC-CCCACATGTCGTACTGCA 299492 Query 110886 GCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCA 110945 | | || || || ||||| || || | | || || ||| || || ||||||| Sbjct 299493 ACTCACCCTGCGAAGCGGGCGAGCCGGCGTACGTCTCGTAGCTGCCGTGCTGCTCAGCCA 299552 Query 110946 ATTCACA-GCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCA-T 111003 || || | |||| ||||| | ||||| || ||||| |||||||| | | |||| | Sbjct 299553 GCTCGCACGATCGC-TCCAGTGCGGCGTGGTAGATGGTCTCAAAGATCTGCACGTTCAGT 299611 Query 111004 CTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACC 111063 | || | || | | || ||||| || || | | || || ||||||| || || Sbjct 299612 CGCCGAGCCT-CGGCCGACTCAAACGCATACCCCATGATCATGAACGCATCCGCAAGGCC 299670 Query 111064 TTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGG 111123 |||||||| | || || || | ||| ||||| || ||||| ||||| ||| || || Sbjct 299671 CTGAACACCGATCCCGATCGGACGGTGACGCATGTTGGACTTGCGCGCCTCCTCGACCGG 299730 Query 111124 ATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATG 111183 ||| | || |||| |||| ||| || || ||| | ||| | | || Sbjct 299731 ATAGTAGTTAATGTCGATGATCTTGTTCAGGTTCTTGCAGATGGCCTTGGCAACGCTGTG 299790 Query 111184 AAGTTTTTCATAATCAAAAGTGCGAGTCTCT---TCATTGACATACTTTGGAAGGGCGAT 111240 || | | | || | || ||| || ||| ||| || | || || ||||| Sbjct 299791 CAGACGCTTAAAGTCGTACGTCTTGGTCACTGGGTCAATGA---ACGTGGGCAGTGCGAT 299847 Query 111241 TGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACA 111300 || || | ||||| || ||| ||| || | | ||||||| | || || ||||| Sbjct 299848 CGAGGCGAGGTTGCACACTGCCACCTCGTCGGGAGCGCTGTACTCGATGATCTCGGTACA 299907 Query 111301 TAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATC 111360 |||||||| | ||| ||||| || | ||||| ||||| ||||| |||| || || Sbjct 299908 CAAGTTGGAGCACTTGATCGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTC 299967 Query 111361 CTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA- 111419 |||||| || ||| | || | |||||||| |||||||| | ||| || || | ||| | Sbjct 299968 CTTGTACAGGATGAAAGGGTTGCCCGTCTCGGTCTGTGACTCGAGGATGGCGTACCAGAG 300027 Query 111420 CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGG 111479 | || ||| | | || || || | || ||||| |||||||| ||||||| Sbjct 300028 CTTCTGCGCTTTG-ACGGTGCGCTTCGAGCGACCCTCGGCCTCGTAGCGCTCGTAGAGGC 300086 Query 111480 CTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAG 111539 |||||||| ||||| ||||| ||||| || || || || || | || | Sbjct 300087 GCTCAAACTCGTCACCGTAGCAGTCGGCCAGACCAGGGCACTCGTTGGGGCACATGAGCG 300146 Query 111540 ACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAA 111599 |||| | || | ||| |||| ||||||||| || || || | ||| || | | | Sbjct 300147 ACCAGTCGCCGTTCTGCTCGACCCTCTTCATGAAGAGATCAGGCACCCAGAGTGCATAGA 300206 Query 111600 AGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCA 111659 |||| || | || |||| || | || ||||| || | || |||||||| | Sbjct 300207 AGAGCTCACGCGCACGCACCTCCTCCTTTCCGTGGTTCTTGCGCAGGTCGAGGAACTCAA 300266 Query 111660 TGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------C 111713 || |||| ||||||||| |||| || | || | | || ||||| | Sbjct 300267 AGACGTCCGAGTGCCATGGTTCAATGTAAATAGCAAAGGCACCGG---GACGCTTGTTGC 300323 Query 111714 CAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCAT 111773 || | || | || |||||||| ||| ||| || ||||| ||||| || | ||| || | Sbjct 300324 CACCCTGGTCGACGTAGCGCGCAGTGTTGTTGAAGACGCGGAGCATGGGCACAATGCCGT 300383 Query 111774 --CTGATTGACCATTTGTCCCCCGAAT--ACGAGATTTATTGGCTCTCACATCATGGATG 111829 |||| ||| || || || ||| ||||| || | | | ||||||| Sbjct 300384 TGCTGAC--ACCGTTGGTGCCGGCAATGTACGAGCCGG--TGCCACGGATGCAATGGATG 300439 Query 111830 TGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAG 111889 | | || || || || ||| ||| ||||| ||||| | | || || | ||| Sbjct 300440 TTGAGGCCGATGCCACCGGCCGTCTTGGAGATCATGGCACAAGTCTTGAGGGTATCGTAG 300499 Query 111890 ATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTT 111949 || |||| ||| ||||| ||||| ||| | ||||||||| || | |||||| Sbjct 300500 ATGCCGTCGATCGAGTCATCCTTCATGGTAACAAGGAAGCACGACGAGAGCTGCGGGTGC 300559 Query 111950 GGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG-GACATCTT 112008 || ||||| || |||||||| || || | ||||| | || ||| || | ||||| Sbjct 300560 GGGGTACCGGCGTTGAAGAGCGTAGGCGAGGCGTGGGTAAAG-TACTTTTGCGACATAAG 300618 Query 112009 GTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCAT 112068 || ||| ||||| | | | || ||||| | ||||||||||||| ||||| ||||| Sbjct 300619 GTTGTACGTCTCGATGGCGCTCTCGATGTCCTGGCCGTGGATGCCGACAGCGACTCGCAT 300678 Query 112069 GAACATGTACTGTGG 112083 || ||||| ||| || Sbjct 300679 GAGCATGTGCTGGGG 300693 >seq29 Length=43685 Score = 104 bits (114), Expect = 3e-17 Identities = 227/333 (68%), Gaps = 8/333 (2%) Strand=Plus/Plus Query 122488 CGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAG-GTT 122546 ||||| | |||||||||||||| | | |||| || ||||||||||||||| | Sbjct 29817 CGATCGGCGACATACTCAATGTATTGGCACATGAGCTTGCTGTTCATACCGATGAGCGCG 29876 Query 122547 ACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGC 122606 || |||| || || | | |||| | |||||||| || || ||||| | | ||| Sbjct 29877 ACG-GGGATTGATTCGCACAGGAACGCCTTCTCAATTTCCACGGCCTCAGTGATGATCTT 29935 Query 122607 GTGGATAGTTTC--GGTA-GTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAA 122663 | | | || || ||| | | | || | | | || |||||| |||||| Sbjct 29936 GAGCACCGTGTCTGGGTGCGCGCGCCTCCTGAGGT--GGCT-GAAGAGAAGGCAGGCAAA 29992 Query 122664 CTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCAT 122723 ||| ||| |||||||| || || || || || || || ||||| ||||| ||||| Sbjct 29993 GTCCGTGTGAAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAACGTGAGACCGGGCAT 30052 Query 122724 GAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTC 122783 |||||| |||||||| | ||| | || | | |||||| || ||||| ||||| ||||| Sbjct 30053 GAGACCGCGCTTCTTGAGCCAGAAGATCGAGGCGAATGAGCCCGAGAAAAAGATGCCCTC 30112 Query 122784 CACACACGCAAACGCAAAAAGGCGTTCGGCGAA 122816 || |||||||| | || || |||||||| Sbjct 30113 GACGGCGGCAAACGCGACCAGACGCTCGGCGAA 30145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031560377600