Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001599495.1_202016-03-01] 56 sequences; 19,606,871 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq21 168 8e-37 seq29 127 3e-24 >seq21 Length=360673 Score = 168 bits (186), Expect = 8e-37 Identities = 909/1429 (64%), Gaps = 49/1429 (3%) Strand=Plus/Plus Query 118155 AACTCACCCGCGAGGGTGCGTCTCAGA-TAGATATTGGTCGTGTATGGCTCAAAGCACTC 118213 |||||||||||||| || | ||| ||||| |||| ||| || ||||| |||||||| Sbjct 299288 AACTCACCCGCGAGCACACGCCG-AGAGTAGATGTTGGACGTATAAGGCTCGAAGCACTC 299346 Query 118214 ATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 118273 || |||| ||| || || || || || ||||| ||||||| || || ||| Sbjct 299347 GTTAAAGCCCAGGATCTGACTCGTCGAAGCGGTCGGCATCGGTGCCAGCAGCAGCGAGTT 299406 Query 118274 ACGGAGACC---CTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTA---GTTGAG 118327 || || || ||| | | || ||||||| | ||||||| | || Sbjct 299407 GCGAAGCCCGTGCTTGGCGATCTTGG---CCTTGAGCTCCGCCCAGTCCCACAGGTCCGA 299463 Query 118328 CTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTC 118387 | || ||||| ||||| || |||| | ||| || || || ||||| || | Sbjct 299464 CGGCGTGACCCCC---CACATGTCGTACTGCAACTCACCCTGCGAAGCGGGCGAGCCGGC 299520 Query 118388 AAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGA-GCTCGCCTCGAGGGCTGCGT 118446 | ||||| || ||| | ||| |||| ||| | | |||| || || || |||| Sbjct 299521 GTACGTCTCGTAGCTGCCGTGCTGCTCAGCCAGCTCGCACGATCGC-TCCAGTGCGGCGT 299579 Query 118447 GATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGA 118506 | || || || ||||| || | | |||| | | |||||| | || |||||||| | Sbjct 299580 GGTAGATGGTCTCAAAGATCTGCACGTTCAGTCGCCGAGCCTCGGCCGACTCAAACGC-A 299638 Query 118507 GTCGGCACAAA-ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGT 118565 | || | || || ||||||| || || || ||||||| || || || || || Sbjct 299639 TACCCCATGATCATGAACGCATCCGCAAGGCCCTGAACACCGATCCCGATCGGACGGTGA 299698 Query 118566 CTCATATTAGACTTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTT 118625 | ||| || ||||| || || ||| || ||||| | || | ||||| | | | || Sbjct 299699 CGCATGTTGGACTTGCGCGCCTCCTCGACCGGATAGTAGTTAATGTCGATGATCTTGTTC 299758 Query 118626 AGATTTTTGGTGACAACCTTTGTGA---TTTCATGAAGCTTT---TCGTAA-TCAAAACT 118678 || || ||| || |||| | | | | || |||| ||||| || | Sbjct 299759 AGGTTCTTGCAGATGGCCTTGGCAACGCTGTGCAGACGCTTAAAGTCGTACGTCT----T 299814 Query 118679 GCGAGTCTCT---TCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGA 118735 | ||| || ||| ||| || | || || ||||| || || || || ||||| | Sbjct 299815 G---GTCACTGGGTCAATGA---ACGTGGGCAGTGCGATCGAGGCGAGGTTGCACACTGC 299868 Query 118736 GGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGT 118795 ||| || | | ||||||| || || || || |||||||| || | ||| || || Sbjct 299869 CACCTCGTCGGGAGCGCTGTACTCGATGATCTCGGTACACAAGTTGGAGCACTTGATCGT 299928 Query 118796 GCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGT 118855 ||| | |||||| || || ||| ||| || |||||||| || ||| | || | Sbjct 299929 GCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACAGGATGAAAGGGTT 299988 Query 118856 CCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGG 118914 |||||||| || || |||| ||| || || | ||||| | || || ||| || ||| Sbjct 299989 GCCCGTCTCGGTCTGTGACTCGAGGATGGCGTACCAGAGCTTCTGC-GCTTTGACGGTGC 300047 Query 118915 CGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGG 118974 || | || ||||| ||||||| ||||||| |||||||| ||||| | Sbjct 300048 GCTTCGAGCGACCCTCGGCCTCGTAGCGCTCGTAGAGGCGCTCAAACTCGTCACCGTAGC 300107 Query 118975 CCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAA 119034 || | || || || || | ||||| | ||| ||||| | || || ||| | Sbjct 300108 AGTCGGCCAGACCAGGGCACTCGTTGGGGCACATGAGCGACCAGTCGCCGTTCTGCTCGA 300167 Query 119035 CCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTT 119094 ||| |||||||||||| || || | |||||| || ||||||| || || || | | Sbjct 300168 CCCTCTTCATGAAGAGATCAGGCACCCAGAGTGCATAGAAGAGCTCACGCGCACGCACCT 300227 Query 119095 CTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTT 119154 | || | || || || |||| || | || || | || |||| |||||| |||| Sbjct 300228 CCTCCTTTCCGTGGTTCTTGCGCAGGTCGAGGAACTCAAAGACGTCCGAGTGCCATGGTT 300287 Query 119155 CCAGGTACACCGCGATTGACCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCAG 119211 | | ||| | || | | || ||| ||| |||||| || || | ||||| Sbjct 300288 CAATGTAAATAGCAAAGGCACCGGGACGCTTGTTGCCACCCTGGTCGACGTAGCGCGCAG 300347 Query 119212 TGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAA 119271 || ||| || || || ||||| || | || || | | || || || || || Sbjct 300348 TGTTGTTGAAGACGCGGAGCATGGGCACAATGCCGTTGCTGACACCGTTGGTGCCGGCAA 300407 Query 119272 --TACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTT 119329 |||||| | || | | || ||||||| | || || || || ||| ||| Sbjct 300408 TGTACGAGCC--GGTGCCACGGATGCAATGGATGTTGAGGCCGATGCCACCGGCCGTCTT 300465 Query 119330 TGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATT 119389 ||||| || || | |||| | ||||||| || |||||||||||| |||| | Sbjct 300466 GGAGATCATGGCACAAGTCTTGAGGGTATCGTAGATGCCGTCGATCGAGTCATCCTTCAT 300525 Query 119390 TGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGG 119449 | | |||||||| ||| | || || || ||||| ||||||||||| || || Sbjct 300526 GGTAACAAGGAAGCACGACGAGAGCTGCGGGTGCGGGGTACCGGCGTTGAAGAGCGTAGG 300585 Query 119450 TGTCGCGTGGATGAACATAC-CTTGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAA 119508 | |||||| | || ||| ||| ||||| || ||| ||||| | | || | Sbjct 300586 CGAGGCGTGGGT-AAAGTACTTTTGCGACATAAGGTTGTACGTCTCGATGGCGCTCTCGA 300644 Query 119509 TGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGG 119557 |||| | ||||| || |||| | ||| ||||| | ||||| ||||| Sbjct 300645 TGTCCTGGCCGTGGATGCCGACAGCGACTCGCATGAGCATGTGCTGGGG 300693 >seq29 Length=43685 Score = 127 bits (140), Expect = 3e-24 Identities = 296/437 (68%), Gaps = 12/437 (3%) Strand=Plus/Plus Query 129743 TTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATAAAATCAAATGGGTTC 129802 ||||| |||||||| ||||| || ||||| || || |||||| ||||| || Sbjct 29715 TTCTCAAAGAAGTTGGTCTTGCCTTCCAACGAAATGTTGGTCATAAAGTCAAACGGACAT 29774 Query 129803 TTTGAGTTCCAAATTGC--TGGCACTCCAATCTGTTTGAGGAGACGATCCGAGACGTACT 129860 | ||| || | ||| ||| ||| | | | || | ||||| | ||| |||| Sbjct 29775 GTGGAG--CCGTAGTGCACTGGGTTTCCGAGCGATACCAGCAAGCGATCGGCGACATACT 29832 Query 129861 CAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAG-GTTACATGGGAGCGCGTCC 129919 ||||||| | |||| || | ||||||||||||||| | || |||| | || Sbjct 29833 CAATGTATTGGCACATGAGCTTGCTGTTCATACCGATGAGCGCGACG-GGGATTGATTCG 29891 Query 129920 AAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTGAATGGTCTCCG-- 129977 | | |||| |||||||||| ||||| || || | ||| | | | || || | Sbjct 29892 CACAGGAACGCCTTCTCAATTTCCACGGCCTCAGTGATGATCTTGAGCACCGTGTCTGGG 29951 Query 129978 TGCCAG-GTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTCCTGGTGGAGACCC 130036 ||| | | || || | | || |||||| |||||| ||| ||| |||||| Sbjct 29952 TGCGCGCGCCTCCTGAGGT--GGCT-GAAGAGAAGGCAGGCAAAGTCCGTGTGAAGACCC 30008 Query 130037 TCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTC 130096 |||||||| |||||||| || || ||||| ||||| ||||||||||| |||||||| Sbjct 30009 TCGTCACGCGAGATGAGCTCGTTGGAGAACGTGAGACCGGGCATGAGACCGCGCTTCTTG 30068 Query 130097 AACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGCA 130156 | |||||| |||| |||||||| ||||| ||||| ||||| || || ||||| Sbjct 30069 AGCCAGAAGATCGAGGCGAATGAGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAACGCG 30128 Query 130157 AAGAGACGCTCAGCAAA 130173 | |||||||| || || Sbjct 30129 ACCAGACGCTCGGCGAA 30145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434767095360