Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001599495.1_202016-03-01] 56 sequences; 19,606,871 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq21 280 2e-70 seq29 123 3e-23 seq11 118 1e-21 >seq21 Length=360673 Score = 280 bits (310), Expect = 2e-70 Identities = 913/1395 (65%), Gaps = 35/1395 (3%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| ||||||| || || |||| || || || | ||||| || | | Sbjct 300693 CCCCAGCACATGCTCATGCGAGTCGCTGTCGGCATCCACGGCCAGGACATCGAGAGCGCC 300634 Query 104282 TTGGAGACATACGACAAGATGTCCCAAG-GTATGTTCATTCACGCAACACCAACCCTCTT 104340 | ||||| ||| || ||||| ||| ||| || | ||||| | || || ||||| Sbjct 300633 ATCGAGACGTACAACCTTATGTCGCAAAAGTACTTT-ACCCACGCCTCGCCTACGCTCTT 300575 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 ||| || ||||| || || || | || ||||||||| | ||| ||||| || Sbjct 300574 CAACGCCGGTACCCCGCACCCGCAGCTCTCGTCGTGCTTCCTTGTTACCATGAAGGATGA 300515 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 ||| ||| |||| ||||| | || || | | ||||| ||||| ||| ||| || Sbjct 300514 CTCGATCGACGGCATCTACGATACCCTCAAGACTTGTGCCATGATCTCCAAGACGGCCGG 300455 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTA--TTCGGGGGACA 104518 || || || | |||||||| | | | || |||||| || || || Sbjct 300454 TGGCATCGGCCTCAACATCCATTGCATCCGTGGCACCGG--CTCGTACATTGCCGGCACC 300397 Query 104519 AATGGTCAATCAG--ATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 104576 || ||| |||| | || ||| | || ||||| ||||| || ||| ||| ||||||| Sbjct 300396 AACGGTG--TCAGCAACGGCATTGTGCCCATGCTCCGCGTCTTCAACAACACTGCGCGCT 300339 Query 104577 ATGTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCAT 104630 | || | || | ||| ||||| || | | || | || |||| |||| Sbjct 300338 ACGTCGACCAGGGTGGCAACAAGCGTCCC---GGTGCCTTTGCTATTTACATTGAACCAT 300282 Query 104631 GGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGC 104690 ||||| |||| || | |||||||| || |||| ||||| || | ||||||| || Sbjct 300281 GGCACTCGGACGTCTTTGAGTTCCTCGACCTGCGCAAGAACCACGGAAAGGAGGAGGTGC 300222 Query 104691 GGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 104749 | ||| || || ||||||| || |||||| | || ||||||||||||||||| || ||| Sbjct 300221 G-TGCGCGTGAGCTCTTCTATGCACTCTGGGTGCCTGATCTCTTCATGAAGAGGGTCGAG 300163 Query 104750 GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTG 104809 ||| ||| | ||||| ||| | || || || || |||||||| |||| | Sbjct 300162 CAGAACGGCGACTGGTCGCTCATGTGCCCCAACGAGTGCCCTGGTCTGGCCGACTGCTAC 300103 Query 104810 GGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCG-AC 104868 ||||| |||||||| ||| ||| ||||||| || ||||| ||| ||| || Sbjct 300102 GGTGACGAGTTTGAGCGCCTCTACGAGCGCTACGAGGCCGAGGGTCGCTCGA-AGCGCAC 300044 Query 104869 GGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 104927 || ||| || || | | ||| | || || ||| |||| || |||||||| || | | Sbjct 300043 CGTCAAAGC-GCAGAAGCTCTGGTACGCCATCCTCGAGTCACAGACCGAGACGGGCAACC 299985 Query 104928 CATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 104987 | | ||| || ||||| |||||| |||| ||||| || || ||||| | || || Sbjct 299984 CTTTCATCCTGTACAAGGACGCCGCCAACCGCAAGAGCAACCAGAAGAACCTCGGCACGA 299925 Query 104988 TCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTG 105047 ||||| | ||||| | ||||| || ||| | || | | | || ||| ||| | Sbjct 299924 TCAAGTGCTCCAACTTGTGTACCGAGATCATCGAGTACAGCGCTCCCGACGAGGTGGCAG 299865 Query 105048 TGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTG 105107 |||| |||||||| || ||||| || |||| || | || |||| ||| ||||| | | Sbjct 299864 TGTGCAACCTCGCCTCGATCGCACTGCCCACGTTCATTGACCCAGTGACCAAGACGTACG 299805 Query 105108 ATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTG 105167 | | | | || ||| ||| | || | || ||| ||||| |||| | || | Sbjct 299804 ACTTTAAGCGTCTGCACAGCGTTGCCAAGGCCATCTGCAAGAACCTGAACAAGATCATCG 299745 Query 105168 ATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTG 105227 | | || | || || || ||| || || || || || ||| | |||||||| || | Sbjct 299744 ACATTAACTACTATCCGGTCGAGGAGGCGCGCAAGTCCAACATGCGTCACCGTCCGATCG 299685 Query 105228 GTCTCGGTGTTCAGGGTCTCGCGGATGTATTCAT--TCTTTGTCGCCACGCATTTGATTC 105285 | ||||||||||||| || ||||||| ||||| || | | | | || ||||| || Sbjct 299684 GGATCGGTGTTCAGGGCCTTGCGGATGCGTTCATGATCATGG--GGTATGCGTTTGAGTC 299627 Query 105286 CGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGA 105345 | ||| || | | | || | || || ||||||||||| || |||||||| || || Sbjct 299626 GGCCGAGGCTCGGCGACTGAACGTGCAGATCTTTGAGACCATCTACCACGCCGCACTGGA 299567 Query 105346 GGCGA--GTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCA 105403 |||| || | ||| |||| ||| | || || || || | | || || || Sbjct 299566 -GCGATCGTGC-GAGCTGGCTGAGCAGCACGGCAGCTACGAGACGTACGCCGGCTCGCCC 299509 Query 105404 GCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGA-GACCAAGCTTCACTACGA 105462 ||||| || || | | | || | || ||||||| ||| | | | | | | || Sbjct 299508 GCTTCGCAGGGTGAGTTGCAGTACGACATGTGGG-GGGTCACGCCGTCGGACCTGTGGGA 299450 Query 105463 CTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGC 105522 ||||| | ||||||| ||| || | || ||||| ||| || || |||| Sbjct 299449 CTGGGCGGAGCTCAAGGCCAAGATCGCCAAGCACGGGCTTCGCAACTCGCTGCTGCTGGC 299390 Query 105523 TCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTA 105582 || ||||| || || || || || ||| |||| ||| || ||||| || || || Sbjct 299389 ACCGATGCCGACCGCTTCGACGAGTCAGATCCTGGGCTTTAACGAGTGCTTCGAGCCTTA 299330 Query 105583 CACGACGAACATCTA 105597 ||| | |||||||| Sbjct 299329 TACGTCCAACATCTA 299315 >seq29 Length=43685 Score = 123 bits (136), Expect = 3e-23 Identities = 122/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 94798 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 94857 || || ||||| || |||| ||||| || ||||| ||||| ||||| || || ||| Sbjct 30145 TTCGCCGAGCGTCTGGTCGCGTTTGCCGCCGTCGAGGGCATCTTTTTCTCGGGCTCATTC 30086 Query 94858 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 94917 | | || | |||||||||||||| ||||||||||| |||||| |||||||||||| Sbjct 30085 GCCTCGATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACGTTCTCCAACGAG 30026 Query 94918 CTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 || ||||| ||||||||||| || ||| || ||||| Sbjct 30025 CTCATCTCGCGTGACGAGGGTCTTCACACGGACTTTGC 29988 >seq11 Length=593102 Score = 118 bits (130), Expect = 1e-21 Identities = 204/294 (69%), Gaps = 2/294 (1%) Strand=Plus/Plus Query 169160 TTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATCGGCATCCGTCATGATCATGAGA 169219 |||| ||||||||||||||||| ||||| |||| ||| ||| ||||||||||||| | Sbjct 182000 TTGATGATGAGACCCTTGATGTGCGAACCATCGTGATCCTGATCAGTCATGATCATGATA 182059 Query 169220 CGACCATACCG-AAGCTCGGAAACATCTTGATAGTCCTTACCCTGTTGAAGACCCAAGAT 169278 | || || || ||||| | || | || | ||| || || || || || | ||| Sbjct 182060 CTGCCGTAGCGCAAGCT-GTTGGTGTCGAGGTACTGCTTGCCATGCTGGAGGCCGAGGAT 182118 Query 169279 CTTCTTGAGATCGTTGAACTCTTGGTTTGATGTGAGCTGTGTGACAGAGGCATCGCGAAC 169338 || ||||| | |||| || ||| ||| ||| | || || ||||| || Sbjct 182119 CTCCTTGATGGCCTTGATTTCGGCGTTCTTCATGATCTGGTCGTGGGACGCTTCGCGCAC 182178 Query 169339 ATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCACGACCAACGACGGAGAG 169398 || ||| ||||| ||||| ||||||||||||| || | || || || || Sbjct 182179 GTTGAGCAGCTTACCACGGAGAGGAAAGACACCGTAGTTGTCTCTTCCGACTTCGACGAT 182238 Query 169399 ACCCGCGACTGCGAGAGTCTTCGCCGAGTCACCCTCGGTGACGATGAGCGTACA 169452 || || || ||||| | ||| ||||||||||| ||||||| |||||| ||||| Sbjct 182239 GCCGGCCACGGCGAGCGACTTGGCCGAGTCACCTTCGGTGAGGATGAGTGTACA 182292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260391717440