Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001599495.1_202016-03-01] 56 sequences; 19,606,871 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq16 275 2e-68 seq10 165 2e-35 seq4 116 1e-20 seq2 93.3 1e-13 >seq16 Length=557755 Score = 275 bits (304), Expect = 2e-68 Identities = 886/1360 (65%), Gaps = 25/1360 (2%) Strand=Plus/Plus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 || || || |||||| | |||||||| || || ||||| || || ||||||||||| ||| Sbjct 302260 GCCATCGGTATCGATCTTGGTACTACCTACTCCTGTGTCGCCGTCTGGCAAAATGACCGT 302319 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 || || | ||||| || || || |||||| | || || || ||||| || || || ||| Sbjct 302320 GTCGAGGTCATTGCCAACGACCAGGGTAACCGCACTACCCCCTCATATGTCGCCTTCACC 302379 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || | |||||| | ||||| ||| | || || || || | || || || | || Sbjct 302380 GACTCGGAGCGTCTCATTGGAGATGCCGCCAAGAACCAGGTCGCCATGAACCCTCACAAC 302439 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTTTTCTGACAAATCTACA---CA 349434 || || || || || ||||| | || || | ||||| ||| | || || Sbjct 302440 ACCGTCTTCGACGCCAAGCGTTTGATCGGCCGCAAGTTC----GACGACGCTGAGGTCCA 302495 Query 349435 ATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTAT 349494 ||||| | || || | ||||| | ||| | | ||||| || || || Sbjct 302496 GTCTGACATGAAGCACTGGCCTTTC---GAGGTTACCTCGGTCGGTGGCAAGCCCCAGAT 302552 Query 349495 TGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTA-CCCGAAGAAATTTCATCAATGG 349553 | ||||||| || ||||| || || | ||| |||||||| || ||||| |||| Sbjct 302553 TCGCATTGAATACAAGGGTGAG-AAGAAGACTTTCACTCCCGAAGAGATCTCATCCATGG 302611 Query 349554 TTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTG 349613 || | | || ||| || | ||| || || || | |||| || || | ||||||| Sbjct 302612 TTCTCCTCAAGATGCGCGAGACTGCCGAGGCTTACCTCGGTGGTACCGTCAAGGATGCTG 302671 Query 349614 TTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCA 349673 | | ||||| || || || || || || | ||||| || || || |||||||| | Sbjct 302672 TCGTCACTGTTCCCGCTTACTTCAACGACTCGCAGCGACAGGCCACCAAGGATGCTGGTA 302731 Query 349674 GCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCAT 349733 |||| |||| | || || | | || || || || ||||||||||| || || || | Sbjct 302732 TCATTTCGGGCCTTAACGTGATGCGTATCATCAACGAGCCCACTGCTGCCGCCATCGCTT 302791 Query 349734 ATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTG 349793 | || || || || | || || || || ||| |||| ||||| ||| | ||||| | Sbjct 302792 ACGGTCTCGACAAGAAGACCGAGGGTGAGAAGAATGTTCTCATTTTCGATCTCGGTGGAG 302851 Query 349794 GTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTG 349853 |||| || |||||||| || || || |||| ||||| || || || || || || || | Sbjct 302852 GTACCTTCGATGTATCGCTCCTTACCATTGAGGAGGGTATCTTCGAGGTCAAGGCCACCG 302911 Query 349854 CTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTA 349913 ||||||| || ||||||||||| || || ||||| || |||||||| || ||||| Sbjct 302912 CTGGTGACACCCATCTTGGTGGTGAGGACTTTGACAACCGTCTCGTCAACCACTTTGTCC 302971 Query 349914 AAGAATTTAAGCGTCAAGCTAAAATTGATATTGGAGA-TAATCCTAGAGCAATGCGTCGC 349972 | || || ||||| |||| || | ||| | || || | || | ||||| Sbjct 302972 AGGAGTTCAAGCG-CAAGAACAAGAAGGACTTGACCACCAACGCTCGTGCCCTTCGTCGT 303030 Query 349973 CTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATT 350032 || | ||||| ||||| ||||| |||||| | | || || || | || || | || Sbjct 303031 CTTCGCACTGCTTGTGAGCGTGCCAAGCGTACTCTCTCGTCGGCTGCTCAGACGACCATC 303090 Query 350033 GAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTT 350092 || || || || || ||| || | || |||| | || || || ||||| || || Sbjct 303091 GAGATCGACTCGCTCTTTGAGGGTATCGACTTCTACACCTCGATCACCCGTGCCCGTTTC 303150 Query 350093 GAAGAATTATGTATGGATCT-TTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAA 350151 || || | ||| || || || | | | || || || ||||| || || || | Sbjct 303151 GAGGAGCTCTGTGGTGACCTCTTCTCGCAC-ACCATTGAGCCTGTCGAGAAGGTTCTCCG 303209 Query 350152 AGA-TGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACAC 350210 || | ||| | || | | || | || | || | || | || ||||||||||| | Sbjct 303210 CGACTCCAAGATTGACAAGGGCTCTG-TTCACGAGATCGTCCTTGTCGGTGGTTCTACTC 303268 Query 350211 GTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGAT 350270 |||| || || || || || | || | || || || || || || | | | | Sbjct 303269 GTATCCCCAAGGTGCAGAAGCTGCTCACCGACTTCTTCAACGGTCGTGAGCTTAACAAGT 303328 Query 350271 CAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTG 350330 | || || || ||||| |||||||| || ||||| ||||| ||||| | ||| | || | Sbjct 303329 CGATCAACCCCGATGAGGCTGTTGCCTACGGTGCCGCTGTCCAGGCCGCCATTCTTTCGG 303388 Query 350331 GAAATAAGAGTTC---TAAAATTGATGATCTATTACTACTAGATGTAACTCCACTTTCGC 350387 | | | | ||| || | | | || || | || || ||||| |||| || ||| Sbjct 303389 G---TGACACTTCAGAGAAGACTCAGGACCTGCTCCTTCTCGATGTTGCTCCTCTCTCGA 303445 Query 350388 TTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTAC 350447 | || | || || | |||| || | || ||| || || || | ||||| | Sbjct 303446 TGGGTATCGAGACCGCCGGTGGTGTCTTCACACCTCTCATCAAGAGGAACACCACTGTGC 303505 Query 350448 CTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATTC 350507 | || || ||||| | | || || || | ||| || || ||||| | ||| || | Sbjct 303506 CCACCAAGAAGTCGGAGATCTTCTCGACTTATGCCGACAACCAGCCCGGTGTATTGATCC 303565 Query 350508 AAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAA 350547 | || || || || || ||||| ||||| ||||| || || Sbjct 303566 AGGTGTTCGAGGGCGAGCGTGCCCGCACCAAAGACAACAA 303605 >seq10 Length=589446 Score = 165 bits (182), Expect = 2e-35 Identities = 175/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || | || | ||||| ||||| || |||||||| ||||| || || || Sbjct 214695 CATACCACCGCGGAGTCGCAATACAAGGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTC 214636 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| || ||||| || || || ||||| ||||| ||||| ||||||||||| Sbjct 214635 GGAGAGCGTTCGGCCGTCTTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCAGG 214576 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| ||||| || ||||| || || || || || || || || | || || | || Sbjct 214575 AGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTC 214516 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || |||| ||||| || || || || || |||||||||||||| Sbjct 214515 GACTTCGAGAGTAATGGTCTTGCCCGTGAGCGTCTTAACAAAAATCTGCAT 214465 Score = 134 bits (148), Expect = 4e-26 Identities = 157/211 (74%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 140527 GAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTT 140586 || |||| |||||||| || || || ||||| || || || || | || || ||||||| Sbjct 214902 GACCAAG-TGAAGAGTGGATTCCTTCTGAATGTTGTAGTCCGACAGAGTGCGACCATCTT 214844 Query 140587 CAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCT 140646 | || || || || |||||||| ||||| ||||||||||||||||| ||||| || || | Sbjct 214843 CGAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTT 214784 Query 140647 GAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCT 140706 | || || || || || || || || | || || | || ||||| || || | |||| Sbjct 214783 GGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACTTCGAGAGTGATGGTCT 214724 Query 140707 TTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || || || || ||||| |||||||| Sbjct 214723 TGCCTGTGAGCGTCTTGACAAAGATCTGCAT 214693 >seq4 Length=1388522 Score = 116 bits (128), Expect = 1e-20 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 140504 TTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATA 140563 |||| | || ||||| | || | ||||| ||||| || ||||| || || || || || Sbjct 153927 TTACTTGCCGCCACGGAGTCGCAACACAAGGTGAAGTGTCGACTCCTTCTGGATGTTGTA 153986 Query 140564 ATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATC 140623 || || | || || || |||||||| || || ||||||||||| ||||| ||||| || Sbjct 153987 GTCCGAGAGCGTGCGGCCGTCTTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTC 154046 Query 140624 AGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG 140683 ||| || || || || || ||||| || || || || || || || || | || || | Sbjct 154047 AGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATTGTGTCGGAAGA 154106 Query 140684 TTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTT 140722 || || ||||| || | ||||| ||||| || || || Sbjct 154107 CTCCACCTCAAGGGTGATCGTCTTGCCGGTCAGAGTCTT 154145 Score = 107 bits (118), Expect = 6e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 140508 ATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCA 140567 ||||||||||| | | || ||||| || || || || || || || || || || || Sbjct 1196042 ATACCACCACGCAGACGGAGCACAAGGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCC 1195983 Query 140568 GATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGA 140627 || | || || ||||| || || || || || || ||||| || || ||||| || || Sbjct 1195982 GAGAGGGTGCGGCCATCCTCGAGCTGCTTACCGGCGAAGATCAGGCGCTGCTGGTCGGGG 1195923 Query 140628 GGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCA 140687 ||||| || || || |||||||| || || || ||||| || || | || || | || Sbjct 1195922 GGAATACCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCC 1195863 Query 140688 ACTTCAAGTGTAACTGTCTTTCCGGTTAGTGT 140719 || ||||| |||| ||||| || ||| |||| Sbjct 1195862 ACCTCAAGGGTAATGGTCTTACCTGTTGGTGT 1195831 >seq2 Length=1873563 Score = 93.3 bits (102), Expect = 1e-13 Identities = 226/341 (66%), Gaps = 6/341 (2%) Strand=Plus/Minus Query 349562 AAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACT 349621 || ||||| || | |||||| || || | || | | || || | || ||| | || Sbjct 465830 AAGATGAAAGAGACTGCTGAGGCTTACCTCGGCCACAAGGTCACCCACGCCGTTGTCACC 465771 Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCG 349681 || || |||||||| || || || ||||| || || || |||||||||| ||| || Sbjct 465770 GTTCCCGCCTATTTCAACGACGCTCAGCGACAGGCCACTAAGGATGCTGGCACCATCGCT 465711 Query 349682 GGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTT 349741 || | || || || |||| | || || || || ||||| || || || || || || Sbjct 465710 GGTCTTAACGTGCTGCGAATCGTCAACGAGCCTACCGCTGCTGCCATCGCTTACGGTCTC 465651 Query 349742 GATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTT 349801 || || | | ||| ||| | || || ||| ||| | || ||||||||||| Sbjct 465650 GACAAGAAG---GACGGTGAATCGCAGATCATTGTTTACGATCTTGGCGGTGGTACTTTC 465594 Query 349802 GATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGAT 349861 || || || || || | |||| ||| | || || ||| || ||||| || || Sbjct 465593 GACGTGTCGCTCCTCTCGATTGACTCGGGCGTCTTCGAGGTTCTTGCCACTGCCGGCGAC 465534 Query 349862 ACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTC 349902 || || |||||||| || || ||||| || || |||||| Sbjct 465533 ACTCACCTTGGTGGTGAGGACTTTGACAACCG---CGTTTC 465496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515253312804968