Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001599495.1_202016-03-01] 56 sequences; 19,606,871 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq21 298 6e-76 seq10 176 5e-39 seq4 154 2e-32 seq29 105 8e-18 >seq21 Length=360673 Score = 298 bits (330), Expect = 6e-76 Identities = 1142/1756 (65%), Gaps = 73/1756 (4%) Strand=Plus/Plus Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097 || |||||||||||| | ||||||||||| ||||| ||||||||||| | |||||| || Sbjct 298967 GTTCGCAGATAGTACGTACCCGTCTTGAGTCCCTTTTTCCAGCCGTAAAAGTGCATCGAG 299026 Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATG 80157 |||||| ||| || || | | | ||||| || ||||| ||||| ||||| Sbjct 299027 GTGAGCTGTCCAAACGTCGGTGCCGAAAGGTGAATGTTGAGCGACTGCGACTGGCAGATA 299086 Query 80158 AAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGTA 80217 || || || || || || ||||| || || || | ||| || || ||||| || || Sbjct 299087 AACGCTCCTCGGTCCGCAGCCATGTCGATGATCGCCTTCTGGCTGATCTCCCAGACCGTC 299146 Query 80218 CGATACACCTTAC-GAAGCTCCTCTGGAATGTC---CAGATTTTGCACACTGCCACCGTC 80273 |||| ||| || || || |||||| | || || || | || |||| Sbjct 299147 TTGTACAGCTTCTTGATGCGG-TCAGGAATGCCTGGCACGTTCTGGATCGATCCGCCGTG 299205 Query 80274 CTTTACAATTTGATTTTTCAATTCAGACGT-CCAGACACCAAGCTTGTGCAGATCTTTCA 80332 | | || | || |||| | | ||| ||| | || ||| ||| || || Sbjct 299206 CGCGATGATACGGTTCTTCA-TCGTGTCGTTCCACAGGCCCTGCTCCACCAGCTCGCGCA 299264 Query 80333 CAAGGTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGA-TACAGGTTT 80391 | | ||| | || ||||| |||||||| || || ||| || | ||| Sbjct 299265 ACAACCACGGGTTCACCACCTGGAACTCACCCGCGAGCACACGCCG-AGAGTAGATGTTG 299323 Query 80392 GTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGC 80451 | || |||||||| || |||||| || ||||||||| ||| || |||||| Sbjct 299324 GACGTATAAGGCTCGAAGCACTCGTTAAAGCCCAGGATCTGACTCGTCGAAGCGGTCGGC 299383 Query 80452 ATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATAT---CCTCGCGCAAA 80508 ||||| | | || ||| || || || || |||||||| ||| | ||| | || Sbjct 299384 ATCGGTGCCAGCAGCAGCGAGTTGCGAAGCCCGTGCTTGGCGATCTTGGCCTTGAGC--- 299440 Query 80509 TCTGACCAAAAAT-CAACCCCAACGCTGTGACCCC--ACATGTCGTGCTGCAAGATGCCC 80565 || | ||| || || ||| |||||||| ||||||||| |||||| ||| Sbjct 299441 TCCGCCCAGTCCCACAGGTCCGACGGCGTGACCCCCCACATGTCGTACTGCAACTCACCC 299500 Query 80566 TCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACAC 80625 | ||| || || || || ||| |||||||||| ||| | | || |||||||| ||| Sbjct 299501 TGCGAAGCGGGCGAGCCGGCGTACGTCTCGTAGCTGCCGTGCTGCTCAGCCAGCTCGCAC 299560 Query 80626 GA---CTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGCGC 80682 || |||| || || ||||| || ||| |||||||| | ||||| | || Sbjct 299561 GATCGCTCC---AGTGCGGCGTGGTAGATGGTCTCAAAGATCTGCACGTTCAGTCGCCGA 299617 Query 80683 GCCTGTGGGTCG--TCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAA 80740 ||| | || || || |||| | ||||| ||||||||| | || || |||||||||| Sbjct 299618 GCC--TCGGCCGACTCAAACGCATACCCCATGATCATGAACGCATCCGCAAGGCCCTGAA 299675 Query 80741 CGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGA-TCGCTCGGCCTCCGGAATTGGGTAA 80799 | ||||| ||||||| ||||| ||| |||| || | || | |||||| | || || Sbjct 299676 CACCGATCCCGATCGGACGGTGACGCATGTTGGACTTGCGC-GCCTCCTCGACCGGATAG 299734 Query 80800 AAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTA-ACAACCCGTGTAACATCATGAAG 80858 ||||| | ||||||| ||||||||| | || | | || | ||| || || Sbjct 299735 TAGTTAATGTCGATGATCTTGTTCAGGTT-CTTGCAGATGGCCTTGGCAACGCTGTGCAG 299793 Query 80859 TTTCTGAAAGTCGAA----TTGGTTCCCCT---TC-ACAAATGCCGGAAGGCTCAGGGAC 80910 || ||||||| | ||||| | || || | || | || || | || Sbjct 299794 ACGCTTAAAGTCGTACGTCTTGGT--CACTGGGTCAATGAACGTGGGCAGTGCGATCGAG 299851 Query 80911 GCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAA 80970 || || |||||||| |||||||| || | | | | |||||| ||| || || ||||| Sbjct 299852 GCGAGGTTGCACACTGCCACCTCGTCGGGAGCGCTGTACTCGATGATCTCGGTACACAAG 299911 Query 80971 TTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTG 81030 || || |||| || || || ||||| |||||||| |||| |||| ||||||||| Sbjct 299912 TTGGAGCACTTGATCGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTG 299971 Query 81031 TAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCG 81090 || ||| | ||| | || |||||| |||||||| ||||||||||| ||| | || Sbjct 299972 TACAGGATGAAAGGGTTGCCCGTCTCGGTCTGTGACTCGAGGATGGCGTACCAGAGCTTC 300031 Query 81091 CGCGCCTTGAC----CACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTA-AGCTT 81145 |||| ||||| | | | | | | || |||||| | || |||| || Sbjct 300032 TGCGCTTTGACGGTGCGCTTCGAGCGA----CCCTCGGCCTCGTAGCGCTCGTAGAGGCG 300087 Query 81146 CGTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGG 81204 | || |||| | |||||| | || || | || | ||||||||||| |||||||| || Sbjct 300088 C-TCAAACTCGTCACCGTAGCAG-TCGGCCAGACCAGGGCACTCGTTGGGGCACATGAGC 300145 Query 81205 TGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTG 81264 ||||||| || | ||| || ||||||||| ||||| | |||||| || | Sbjct 300146 GACCAGTCGCCGTTCTGCTCGACCCTCTTCATGAAGAGATCAGGCACCCAGAGTGCATAG 300205 Query 81265 AACAGGTCGCG-GCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTC 81323 || || || || ||| ||| ||||||| | || ||||| ||||| ||||| || || Sbjct 300206 AAGAGCTCACGCGCA-CGCACCTCCTCCTTTCCGTGGTTCTTGCGCAGGTCGAGGAACTC 300264 Query 81324 CATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCGACG------ 81377 | || ||||| |||||||| || | || | || | | || | |||| Sbjct 300265 AAAGACGTCCGAGTGCCATGGTTCAATGTAAATAGCAAAGGCACC---GGGACGCTTGTT 300321 Query 81378 GCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACC 81437 ||||||||||| |||||| || ||||| ||| || || || | ||| || | || || Sbjct 300322 GCCACCCTGGTCGACGTAGCGCGCAGTGTTGTTGAAGACGCGGAGCATGGGCACAATGCC 300381 Query 81438 AT--CTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCA--CCTTGCTGA 81493 | ||||| |||||| || || | || ||| || || | || | | || || Sbjct 300382 GTTGCTGAC--ACCGTTGGTGCCGGCAATGTACGAGCCGGTGCCACGGATGCAATG--GA 300437 Query 81494 TTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCAT 81553 | || ||||||||||| | | ||| || ||| ||||| || | ||| || | Sbjct 300438 TGTTGAGGCCGATGCCACCGGCCGTCTTGGAGATCATGGCACAAGTCTTGAGGGTATCGT 300497 Query 81554 AAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGC 81613 | || || ||||| || | |||||| || | ||| || || | ||| ||| Sbjct 300498 AGATGCCGTCGATCGAGTCATCCTTCATGGTAACAAGGAAGCACGACGAGAGCTGCGGGT 300557 Query 81614 TTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCA 81673 | ||||| ||||| || || || | ||||| | || || | ||||| | Sbjct 300558 GCGGGGTACCGGCGTTGAAGAGCGTAGGCGAGGCGTGGGTAAAGTACTTTTGCGACATAA 300617 Query 81674 GGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCA 81733 ||| || || || || ||| || || | ||||| || |||| ||| || |||| Sbjct 300618 GGTTGTACGTCTCGATGGCGCTCTCGATGTCCTGGCCGTGGATGCCGACAGCGACTCGCA 300677 Query 81734 TAAACATGTACTGGGG 81749 | | ||||| |||||| Sbjct 300678 TGAGCATGTGCTGGGG 300693 >seq10 Length=589446 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||||||||||||||| || |||||||| || ||||| || || ||||| Sbjct 214693 ATGCAGATCTTTGTCAAGACGCTCACAGGCAAGACCATCACTCTCGAAGTCGAGTCTTCG 214752 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || || || |||||||| || |||||||| || ||| Sbjct 214753 GACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGATCAG 214812 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || ||||| || ||||| ||||| |||| ||| || || | ||||| || Sbjct 214813 CAGCGTCTTATCTTTGCCGGCAAGCAGCTCGAAGATGGTCGCACTCTGTCGGACTACAAC 214872 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||||||||||||||| | ||| | |||||||| || || Sbjct 214873 ATTCAGAAGGAATCCACTCTTCACTTGGTCCTTCGTCTTCGTGGAGG 214919 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || || ||||| || ||||| ||||| ||||| Sbjct 294755 ATGCAGATCTTTGTCAAGACCCTCACGGGTAAGACCATCACTCTCGAGGTGGAGTCTTCG 294696 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || || |||||||||||||| ||||| || |||||| Sbjct 294695 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCCGACCAG 294636 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||||||||| |||||||| | ||||| || | ||||| || Sbjct 294635 CAGCGTCTGATCTTCGCTGGTAAGCAGCTCGAGGACGGACGTACGCTTTCGGACTACAAC 294576 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || | || | ||||| || ||||| Sbjct 294575 ATCCAGAAGGAGTCTACCCTGCACTTGGTGCTTCGTCTGCGTGGTGG 294529 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| |||||||| || |||||||| |||||||| || || ||||| Sbjct 214465 ATGCAGATTTTTGTTAAGACGCTCACGGGCAAGACCATTACTCTCGAAGTCGAGTCCTCG 214524 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || || ||||||||||| || |||||||| || ||| Sbjct 214525 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAG 214584 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||||||||| ||||| || | || || || | ||||| || Sbjct 214585 CAGCGTCTCATCTTCGCTGGTAAGCAGCTCGAAGACGGCCGAACGCTCTCCGACTACAAC 214644 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || || || || || ||||| || || ||||| || |||||||| Sbjct 214645 ATTCAGAAAGAGTCGACGCTTCACCTTGTATTGCGACTCCGCGGTGG 214691 >seq4 Length=1388522 Score = 154 bits (170), Expect = 2e-32 Identities = 156/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || || ||||| ||||| |||||||| ||||| || | ||| | ||| | ||||| Sbjct 1195837 ACAGGTAAGACCATTACCCTTGAGGTGGAGTCCTCGGACACCATCGACAATGTCAAGGCC 1195896 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || ||||||||||||||||| ||||| || ||||||||||| || || || || |||||| Sbjct 1195897 AAGATTCAGGACAAGGAGGGTATTCCCCCCGACCAGCAGCGCCTGATCTTCGCCGGTAAG 1195956 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || |||||||||| || ||||| | ||||| || |||| |||||||| || || || Sbjct 1195957 CAGCTCGAGGATGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAATCGACCCTCCAC 1196016 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || || | ||||| || ||||| Sbjct 1196017 CTTGTGCTCCGTCTGCGTGGTGG 1196039 Score = 147 bits (162), Expect = 2e-30 Identities = 164/218 (75%), Gaps = 1/218 (0%) Strand=Plus/Minus Query 27421 AAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAAT 27480 ||||| || ||||||||||| || || |||||||| ||||| || | || | || Sbjct 154145 AAGACTCTGACCGGCAAGACGATCACCCTTGAGGTGGAGTCTTCCGACACAATCGACAAC 154086 Query 27481 TTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTT 27540 | ||||| || || |||||||||||||| || || || |||||||||||||| || ||| Sbjct 154085 GTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCTGACCAGCAGCGTCTCATCTTT 154026 Query 27541 GCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCC 27600 ||||||||||| || || || | || || || | ||||| || |||| ||||| || Sbjct 154025 GCTGGTAAGCAGCTTGAAGACGGCCGCACGCTCTCGGACTACAACATCCAGAAGGAGTCG 153966 Query 27601 ACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAAGT 27638 || ||||| || || ||||| || || || || ||||| Sbjct 153965 ACACTTCACCTTGTGTTGCGACTCCGTGGCGG-CAAGT 153929 Score = 145 bits (160), Expect = 9e-30 Identities = 125/155 (81%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||||||||| || ||||||||||| || || |||||||| ||||| Sbjct 154705 ATGCAAATCTTTGTCAAGACTCTGACCGGCAAGACGATCACCCTTGAGGTGGAGTCTTCC 154646 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||||| || || |||||||||||||| ||||| || |||||| Sbjct 154645 GACACAATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCTGACCAG 154586 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGA 27560 |||||||| || || ||||||||||| || || || Sbjct 154585 CAGCGTCTCATCTTCGCTGGTAAGCAGCTTGAAGA 154551 >seq29 Length=43685 Score = 105 bits (116), Expect = 8e-18 Identities = 130/176 (74%), Gaps = 4/176 (2%) Strand=Plus/Minus Query 64715 AGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTA 64774 ||||||| | || |||||| || || || || || || || || |||||| || | Sbjct 30138 AGCGTCTGGTCGCGTTTGCCGCCGTCGAGGGCATCTTTTTCTCGGGCTCATTCGCCTCGA 30079 Query 64775 TTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCT 64834 | |||||||| || ||||| || || ||||| ||||| |||| || |||||||| |||| Sbjct 30078 TCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACGTTCTCCAACGAGCTCATCT 30019 Query 64835 CTCGGGACGAGGGGCTCCACCAAGAATTTGCGGTTACC--CTGTTCAGCCACCTCA 64888 | || |||||||| || ||| || ||||| | || || ||||||||||||| Sbjct 30018 CGCGTGACGAGGGTCTTCACACGGACTTTGCC--TGCCTTCTCTTCAGCCACCTCA 29965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310000782720