Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001599495.1_202016-03-01] 56 sequences; 19,606,871 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq4 96.9 2e-15 seq10 95.1 8e-15 >seq4 Length=1388522 Score = 96.9 bits (106), Expect = 2e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | || |||||||| | || || || |||||| || ||||| || || || Sbjct 153933 GCCGCCACGGAGTCGCAACACAAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAGTCCGA 153992 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || |||||||||| || ||||| ||||| || | |||||| ||||| || || Sbjct 153993 GAGCGTGCGGCCGTCTTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGGGG 154052 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| |||| || | || ||| | |||||||| ||||| Sbjct 154053 GATACCCTCCTTGTCCTGGATC-TTGGCCTTGACGTTGTCGATTGTGTCGGAAGACTCCA 154111 Query 34658 CTTCCACGGTTATCGTTTTACCGGT 34682 | || | ||| ||||| || ||||| Sbjct 154112 CCTCAAGGGTGATCGTCTTGCCGGT 154136 >seq10 Length=589446 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/224 (70%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||| || || || |||||| || ||||| || || ||||| || || Sbjct 294538 AGACGAAGCACCAAGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAAAGCGTACGT 294597 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || ||||| || || || | |||||| ||||| ||||| | |||||| Sbjct 294598 CCGTCCTCGAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGCGGAATGCCCTCC 294657 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || || | || ||||| |||||| || | || Sbjct 294658 TTGTCCTGGATC-TTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCCACCTCGAGAGT 294716 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711 || || ||||| || | || || ||||| |||||||| |||| Sbjct 294717 GATGGTCTTACCCGTGAGGGTCTTGACAAAGATCTGCATCTTGA 294760 Score = 86.0 bits (94), Expect = 4e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || ||||| || | || || || ||| || |||||||| || || || || ||||| Sbjct 214682 AGTCGCAATACAAGGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCGGAGAGCGTTCGG 214623 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||| || || ||||| || || || | |||||| || || || || | || ||| Sbjct 214622 CCGTCTTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCAGGAGGAATGCCTTCC 214563 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||||| | || ||| | || ||||| | ||| ||||| | || Sbjct 214562 TTGTCCTGGATCTTG-GCCTTGACGTTGTCGATGGTGTCCGAGGACTCGACTTCGAGAGT 214504 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | ||| || |||||||||||||| Sbjct 214503 AATGGTCTTGCCCGTGAGCGTCTTAACAAAAATCTGCAT 214465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729385197048