Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001599495.1_202016-03-01] 56 sequences; 19,606,871 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq10 125 6e-24 seq4 93.3 4e-14 >seq10 Length=589446 Score = 125 bits (138), Expect = 6e-24 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || |||||| | |||||||| ||||| || | || Sbjct 214465 ATGCAGATTTTTGTTAAGACGCTCACGGGCAAGACCATTACTCTCGAAGTCGAGTCCTCG 214524 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || || || ||||| |||||||| || || ||||| Sbjct 214525 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAG 214584 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 |||||| | || | ||| || || || | |||||| | ||| || | ||||| ||||| Sbjct 214585 CAGCGTCTCATCTTCGCTGGTAAGCAGCTCGAAGACGGC-CGAACGCTCTCCGACTACAA 214643 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| || |||||||| | || | || ||||| | || ||||| || Sbjct 214644 CATTCAGAAAGAGTCGACGCTTCACCTTGTATTGCGACTCCGCGGTGGTAT 214694 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || |||||| | || ||||| ||||| || | || Sbjct 214693 ATGCAGATCTTTGTCAAGACGCTCACAGGCAAGACCATCACTCTCGAAGTCGAGTCTTCG 214752 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || || |||||||| |||||||| || || ||||| Sbjct 214753 GACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGATCAG 214812 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||||| || | ||||| || || | || || |||||| Sbjct 214813 CAGCGTCTTATCTTTGCCGGCAAGCAGCTCGAAGATGGTCGCACTCTGTCGGACTACAAC 214872 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||||| ||||| || || | || ||||| | ||| | || || ||| Sbjct 214873 ATTCAGAAGGAATCCACTCTTCACTTGGTCCTTCGTCTTCGTGGAGGC 214920 >seq4 Length=1388522 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 27003 AAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATG 27062 || ||||||||||||||| | || || ||||| ||||| | |||||| | || || | Sbjct 154145 AAGACTCTGACCGGCAAGACGATCACCCTTGAGGTGGAGTCTTCCGACACAATCGACAAC 154086 Query 27063 GTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATAC 27122 ||||| || || || ||||| || || || || || || || |||||| | || | Sbjct 154085 GTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCTGACCAGCAGCGTCTCATCTTT 154026 Query 27123 GCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCG 27182 || || || || | |||||| | || | || || |||||||| || ||||||||| Sbjct 154025 GCTGGTAAGCAGCTTGAAGACGGCCGCACGCTCTCGGACTACAACATCCAGAAGGAGTCG 153966 Query 27183 ACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCA 27216 || | || | || ||||| | || || |||| Sbjct 153965 ACACTTCACCTTGTGTTGCGACTCCGTGGCGGCA 153932 Score = 93.3 bits (102), Expect = 4e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 26979 TTATACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTG 27038 ||| | |||||||| || ||||| || ||||||||||||||| | || || ||||| ||| Sbjct 154714 TTACAGGCCATGCAAATCTTTGTCAAGACTCTGACCGGCAAGACGATCACCCTTGAGGTG 154655 Query 27039 GAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCA 27098 || | |||||| | || || | ||||| || || || ||||| || || || || Sbjct 154654 GAGTCTTCCGACACAATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCC 154595 Query 27099 CCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGA 27142 || || || |||||| | || | ||| || || || | ||||| Sbjct 154594 CCTGACCAGCAGCGTCTCATCTTCGCTGGTAAGCAGCTTGAAGA 154551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434918095557120