Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001599495.1_202016-03-01] 56 sequences; 19,606,871 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq29 102 1e-16 >seq29 Length=43685 Score = 102 bits (112), Expect = 1e-16 Identities = 335/519 (65%), Gaps = 14/519 (3%) Strand=Plus/Plus Query 48183 TCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCG 48242 ||||| || || |||||||||||||| || || || || |||||||| || || | ||| Sbjct 30027 TCGTTGGAGAACGTGAGACCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGAGGCG 30086 Query 48243 AAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAA 48302 || || || || || || ||||| || ||||| ||||| ||| || | ||| || || Sbjct 30087 AATGAGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAACGCGACCAGACGCTCGGCGAAA 30146 Query 48303 CTGGC---TTCGTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGC 48359 |||| | || | ||||| || | ||||| || ||||||| ||| || || Sbjct 30147 GTGGCACGCTTGTCGCTGATCCATCGAAGAGCCCAGTCGGCCTTCTGCTTGACGACCGGG 30206 Query 48360 ATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCT----ATCTTTAACGTAAGT 48415 || || || | || | ||| ||| | || | |||| || | |||||| Sbjct 30207 ATGGTCTCGACGGCGTCAAACAGA----TATTCACGCTGCTCAGGCTCACGGATGTAAGT 30262 Query 48416 ATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTA 48475 || || | || || | || ||||| || || || || ||||| || ||||| Sbjct 30263 GTCGATGAGCAGCGAGTAGGTCTCCGAGTGGATGTTCTCCATCATGATCTGGAAACCGTA 30322 Query 48476 AAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATT 48535 || || | || || | | ||| || |||| || || || ||| | | ||||| || Sbjct 30323 GAAGCAACGAGCCTCGGCGGCCTGAACTTCCGAACTGAAACGCTCAACGAGGTTCTCGTT 30382 Query 48536 TACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTT 48595 || || ||||| ||||| || || || | ||||| ||||| | || || Sbjct 30383 GACGATACCATCCGACGCAGCGAAGAACGCAAGCACATGCGAGATAAAGTGGCGCTCATT 30442 Query 48596 GGAAGTCAGTTTATT---CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGT 48652 | |||| || || |||||| | || || || || | || | || || || || Sbjct 30443 GTCGTTCAGCTTGTTGTCCCAGTCGTGGAGGTCCTTGGAAAGGTCGATCTCCTCTGCGGT 30502 Query 48653 CCAAAATGATGCCTCTGCTTTTTTATACATATTCCATAT 48691 ||| || || ||||| || || || ||||| | ||| || Sbjct 30503 CCAGAAGGAAGCCTCGGCCTTCTTGTACATTTGCCAAAT 30541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668313731840