Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001599495.1_202016-03-01] 56 sequences; 19,606,871 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq10 187 5e-42 seq4 150 4e-31 seq2 86.0 1e-11 >seq10 Length=589446 Score = 187 bits (206), Expect = 5e-42 Identities = 180/231 (78%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| ||||| |||| || | || || || |||||||||||||| | Sbjct 294528 ACCACCACGCAGACGAAGCACCAAGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGA 294587 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 |||||| || || ||||| || || || || || ||||||| ||| || ||||| ||| Sbjct 294588 AAGCGTACGTCCGTCCTCGAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGCGG 294647 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||| || || || | ||||| |||||||||| || || Sbjct 294648 AATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCCAC 294707 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||||||||||| ||||||||||| | ||||| || || |||||||| || Sbjct 294708 CTCGAGAGTGATGGTCTTACCCGTGAGGGTCTTGACAAAGATCTGCATCTT 294758 Score = 179 bits (198), Expect = 8e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || ||||| |||| || | ||| ||| || || ||||||||||| | Sbjct 214919 CCTCCACGAAGACGAAGGACCAAGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCCGAC 214860 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| ||||| || || || || ||||||||||| | ||| || || ||| ||| Sbjct 214859 AGAGTGCGACCATCTTCGAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGATCAGGAGGA 214800 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||||||||||||||| || || ||| | ||||| |||||||||| |||||| Sbjct 214799 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACT 214740 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||||||||| ||||| || || | ||||| || || |||||||| Sbjct 214739 TCGAGAGTGATGGTCTTGCCTGTGAGCGTCTTGACAAAGATCTGCAT 214693 Score = 163 bits (180), Expect = 6e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || || || | ||| || || | ||| ||||| || ||||||||||| | Sbjct 214692 ACCACCGCGGAGTCGCAATACAAGGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCGGA 214633 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||| ||||| || || || || || || || ||||| | ||| || || ||| || Sbjct 214632 GAGCGTTCGGCCGTCTTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCAGGAGG 214573 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || |||||||| |||||||| || || ||| | ||||| |||||||| | ||||| Sbjct 214572 AATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTCGAC 214513 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||||||| || ||||| ||||| | |||||||| || |||||||| Sbjct 214512 TTCGAGAGTAATGGTCTTGCCCGTGAGCGTCTTAACAAAAATCTGCAT 214465 >seq4 Length=1388522 Score = 150 bits (166), Expect = 4e-31 Identities = 139/176 (79%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || |||||||||||||| | ||||||||||| || || || || || || |||||| Sbjct 153970 TCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCTTCAAGCTGCTTACCAGCAAAG 154029 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | ||| || |||||| || |||||||||||||| |||||||| || || ||| | Sbjct 154030 ATGAGACGCTGCTGGTCAGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG 154089 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTT 283084 ||||| ||||| |||| || || || || ||||||||||| || |||| |||||| Sbjct 154090 TCGATTGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTGCCGGTCAGAGTCTT 154145 Score = 147 bits (162), Expect = 5e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || || || || || | || ||| || |||||||||||||| | Sbjct 1196040 ACCACCACGCAGACGGAGCACAAGGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCCGA 1195981 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || || || ||||| ||||||| || || ||||| || Sbjct 1195980 GAGGGTGCGGCCATCCTCGAGCTGCTTACCGGCGAAGATCAGGCGCTGCTGGTCGGGGGG 1195921 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||||||| || ||||| || || || | ||||| |||||||| | || || Sbjct 1195920 AATACCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCCAC 1195861 Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075 || || || || |||||||| || Sbjct 1195860 CTCAAGGGTAATGGTCTTACCTGT 1195837 Score = 118 bits (130), Expect = 2e-21 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 282945 TCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTG 283004 || || || || || || || ||||| | ||| || |||||| ||||||||||||||| Sbjct 154551 TCTTCAAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGGGGAATACCCTCCTTG 154610 Query 283005 TCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATC 283064 || |||||||| || || || | ||||| ||||| |||| || || || || |||||| Sbjct 154611 TCCTGGATCTTGGCCTTGACATTGTCGATTGTGTCGGAAGACTCCACCTCAAGGGTGATC 154670 Query 283065 GTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| || |||| |||||| || || || ||||| Sbjct 154671 GTCTTGCCGGTCAGAGTCTTGACAAAGATTTGCAT 154705 >seq2 Length=1873563 Score = 86.0 bits (94), Expect = 1e-11 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 167288 GACGCCATAGCTCAGTTGGTTAGAGCGTTCGACTGTTAATCGAGAGGTCGTCGGTTCGAA 167347 ||| |||||||||||||||||||||||| ||||||||| ||||||| |||||||| Sbjct 1450635 GACTCCATAGCTCAGTTGGTTAGAGCGTAGCACTGTTAATGCTGAGGTCGGCGGTTCGAG 1450576 Query 167348 CCCGACTGGTGTCGTTT 167364 |||| |||| |||| || Sbjct 1450575 CCCGCCTGGGGTCGCTT 1450559 Score = 84.2 bits (92), Expect = 5e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 167117 GACGCCATAGCTCAGTTGGTTAGAGCGTTCGACTGTTAATCGAGAGGTCGTCGGTTCGAA 167176 ||| |||||||||||||||||||||||| ||||||||| ||||||| |||||||| Sbjct 1450635 GACTCCATAGCTCAGTTGGTTAGAGCGTAGCACTGTTAATGCTGAGGTCGGCGGTTCGAG 1450576 Query 167177 CCCGACTGGTGTCG 167190 |||| |||| |||| Sbjct 1450575 CCCGCCTGGGGTCG 1450562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738448964624