Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001599495.1_202016-03-01] 56 sequences; 19,606,871 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq10 132 3e-26 seq4 123 2e-23 >seq10 Length=589446 Score = 132 bits (146), Expect = 3e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | |||| ||| || ||||||||||| ||| || || |||||||| || Sbjct 214695 CATACCACCGCGGAGTCGCAATACAAGGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTC 214636 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || ||| || |||| || |||||||| || || ||||| | |||||||||||| | Sbjct 214635 GGAGAGCGTTCGGCCGTCTTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCAGG 214576 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | |||||||| ||| ||||| ||| | | | |||||||| | ||| || Sbjct 214575 AGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTC 214516 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | ||||| ||||| |||||||| ||||| || || || ||||| Sbjct 214515 GACTTCGAGAGTAATGGTCTTGCCCGTGAGCGTCTTAACAAAAATCTGCAT 214465 Score = 120 bits (132), Expect = 2e-22 Identities = 155/212 (73%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| ||| || || |||||| ||||||||||| || | || || |||| || Sbjct 294546 CACCAAGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAAAGCGTACGTCCGTCCTC 294605 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| || || ||||||| ||||||||| || | || | || ||||| ||| Sbjct 294606 GAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGCGGAATGCCCTCCTTGTCCTG 294665 Query 44248 TATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 ||||| ||| || ||| | |||||||| | || |||||||| | || || ||| Sbjct 294666 GATCTTGGCCTTGACATTGT--CGATGGTGTCCGAAGACTCCACCTCGAGAGTGATGGTC 294723 Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || |||||||||||||| || ||||| ||||| Sbjct 294724 TTACCCGTGAGGGTCTTGACAAAGATCTGCAT 294755 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| |||||| ||| ||||| || |||||||| || | || ||| | || || Sbjct 214901 ACCAAGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCCGACAGAGTGCGACCATCTTCG 214842 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||||||||| | |||||||||||| | ||| | |||||||| || Sbjct 214841 AGCTGCTTGCCGGCAAAGATAAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGG 214782 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | |||||||| | || || || || | || || ||||| Sbjct 214781 ATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACTTCGAGAGTGATGGTCTTG 214722 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| ||||| || ||||| ||||| Sbjct 214721 CCTGTGAGCGTCTTGACAAAGATCTGCAT 214693 >seq4 Length=1388522 Score = 123 bits (136), Expect = 2e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 |||| |||||| |||||||| || |||||| ||||||||||| || | ||| ||| Sbjct 153943 AGTCGCAACACAAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGG 154002 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 |||| || |||||||| || |||||||| | ||||||||| || | || | ||| ||| Sbjct 154003 CCGTCTTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGGGGGATACCCTCC 154062 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || ||| ||||| ||| | | | || ||||||| || |||||||| | || Sbjct 154063 TTGTCCTGGATCTTGGCCTTGACGTTGTCGATTGTGTCGGAAGACTCCACCTCAAGGGTG 154122 Query 44300 ATCGTCTTTCCCGTGAGGGTCTT 44322 |||||||| || || || ||||| Sbjct 154123 ATCGTCTTGCCGGTCAGAGTCTT 154145 Score = 100 bits (110), Expect = 2e-16 Identities = 136/188 (72%), Gaps = 4/188 (2%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| ||||| || || ||||| ||||||||||| || | ||| ||| | || || Sbjct 1196022 CACAAGGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTC 1195963 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| ||||| ||||||| |||||||| || | || | ||| ||||| ||| Sbjct 1195962 GAGCTGCTTACCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTG 1195903 Query 44248 TATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 ||||| ||| || ||| | |||||||| | ||| |||||||| | ||||| ||| Sbjct 1195902 AATCTTGGCCTTGACATTGT--CGATGGTGTCCGAGGACTCCACCTCAAGGGTAATGGTC 1195845 Query 44306 TTTCCCGT 44313 || || || Sbjct 1195844 TTACCTGT 1195837 Score = 95.1 bits (104), Expect = 9e-15 Identities = 117/158 (74%), Gaps = 4/158 (3%) Strand=Plus/Plus Query 44183 TCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTT 44242 || || |||||||| || || ||||| | ||||||||| || | || | ||| ||||| Sbjct 154551 TCTTCAAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGGGGAATACCCTCCTTG 154610 Query 44243 TCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAA 44300 ||| ||||| ||| || ||| | || ||||||| || |||||||| | || | Sbjct 154611 TCCTGGATCTTGGCCTTGACATTGT--CGATTGTGTCGGAAGACTCCACCTCAAGGGTGA 154668 Query 44301 TCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||||| || || || ||||| || |||||||||||| Sbjct 154669 TCGTCTTGCCGGTCAGAGTCTTGACAAAGATTTGCATG 154706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359990154306552