Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001599495.1_202016-03-01] 56 sequences; 19,606,871 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq10 150 4e-31 seq4 143 6e-29 >seq10 Length=589446 Score = 150 bits (166), Expect = 4e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || || || ||||| || || || || || ||||| || || ||| ||| Sbjct 214468 CAGATTTTTGTTAAGACGCTCACGGGCAAGACCATTACTCTCGAAGTCGAGTCCTCGGAC 214527 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| ||||| || ||||| || ||||| Sbjct 214528 ACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAGCAG 214587 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||||||||||| || | || || |||| || ||| | Sbjct 214588 CGTCTCATCTTCGCTGGTAAGCAGCTCGAAGACGGCCGAACGCTCTCCGACTACAACATT 214647 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 || ||||| || || || || ||||| ||| ||||| Sbjct 214648 CAGAAAGAGTCGACGCTTCACCTTGTATTGCGACTC 214683 Score = 141 bits (156), Expect = 2e-28 Identities = 155/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || |||||||| || || ||||| ||||| || || || ||| Sbjct 214696 CAGATCTTTGTCAAGACGCTCACAGGCAAGACCATCACTCTCGAAGTCGAGTCTTCGGAC 214755 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| || ||||| ||||| || ||||| || ||||| Sbjct 214756 ACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGATCAGCAG 214815 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| ||||| || |||||||||||||| | ||||| | || || ||| | Sbjct 214816 CGTCTTATCTTTGCCGGCAAGCAGCTCGAAGATGGTCGCACTCTGTCGGACTACAACATT 214875 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || ||||| || || || |||| Sbjct 214876 CAGAAGGAATCCACTCTTCA-CTTG 214899 Score = 136 bits (150), Expect = 1e-26 Identities = 154/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || ||||| || || || ||||| ||||||||||| || ||| Sbjct 294752 CAGATCTTTGTCAAGACCCTCACGGGTAAGACCATCACTCTCGAGGTGGAGTCTTCGGAC 294693 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| |||||||| || || || || || |||||||| Sbjct 294692 ACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCCGACCAGCAG 294633 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || |||||||| || ||| | || ||| | || || ||| || Sbjct 294632 CGTCTGATCTTCGCTGGTAAGCAGCTCGAGGACGGACGTACGCTTTCGGACTACAACATC 294573 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || ||||| |||| Sbjct 294572 CAGAAGGAGTCTACCCTGCA-CTTG 294549 >seq4 Length=1388522 Score = 143 bits (158), Expect = 6e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 177936 AAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAAC 177995 || ||||| || || || ||||||||||| |||||||| || ||||| ||||| ||| Sbjct 154145 AAGACTCTGACCGGCAAGACGATCACCCTTGAGGTGGAGTCTTCCGACACAATCGACAAC 154086 Query 177996 GTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTC 178055 ||||| ||||| |||||||| || || ||||| || |||||||| || || ||||| Sbjct 154085 GTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCTGACCAGCAGCGTCTCATCTTT 154026 Query 178056 GCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCA 178115 || || || ||||| ||||| || | || || | || || ||| |||| || || || Sbjct 154025 GCTGGTAAGCAGCTTGAAGACGGCCGCACGCTCTCGGACTACAACATCCAGAAGGAGTCG 153966 Query 178116 ACACTGCATCTTGTTTTGAGACTC 178139 ||||| || ||||| ||| ||||| Sbjct 153965 ACACTTCACCTTGTGTTGCGACTC 153942 Score = 140 bits (154), Expect = 8e-28 Identities = 142/185 (77%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 ||||| || || || ||||| |||||||| ||| ||||||||||| || ||||| Sbjct 1195837 ACAGGTAAGACCATTACCCTTGAGGTGGAGTCCTCGGACACCATCGACAATGTCAAGGCC 1195896 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 |||||||||||||| || || || || || |||||||| || || ||||||||||| || Sbjct 1195897 AAGATTCAGGACAAGGAGGGTATTCCCCCCGACCAGCAGCGCCTGATCTTCGCCGGTAAG 1195956 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 |||||||| ||||| | || || | || || ||| |||| || ||||| || || || Sbjct 1195957 CAGCTCGAGGATGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAATCGACCCTCCAC 1196016 Query 178125 CTTGT 178129 ||||| Sbjct 1196017 CTTGT 1196021 Score = 116 bits (128), Expect = 9e-21 Identities = 117/152 (77%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || ||||| || || || ||||||||||| |||||||| || ||| Sbjct 154702 CAAATCTTTGTCAAGACTCTGACCGGCAAGACGATCACCCTTGAGGTGGAGTCTTCCGAC 154643 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| ||||| |||||||| || || || || || |||||||| Sbjct 154642 ACAATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCTGACCAGCAG 154583 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGA 178075 || || |||||||| || || ||||| ||||| Sbjct 154582 CGTCTCATCTTCGCTGGTAAGCAGCTTGAAGA 154551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730336322864