Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001660065.1_202016-06-08] 4,767 sequences; 20,622,051 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq4260 141 2e-28 seq4481 84.2 5e-11 >seq4260 Length=107242 Score = 141 bits (156), Expect = 2e-28 Identities = 399/611 (65%), Gaps = 9/611 (1%) Strand=Plus/Minus Query 248833 TTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATT 248892 ||||| ||||| ||| || ||| | ||| || | |||||| ||| || || Sbjct 47951 TTCAAGACGCTCGAGCGTTCCTATTTGCTCCGCATCAACGGCAAGGTCGCAGAGCGTCCC 47892 Query 248893 CAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTC 248952 ||||||||| | |||||||| |||||||| || ||| | ||||| ||||||| || Sbjct 47891 CAGCACATGCTCATGCGAGTCGCTGTCGGCATCCACGGCCAGGACATCGAGAGCGCCATC 47832 Query 248953 GAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAAC 249012 |||||||||| | ||| || | | || || ||| | || |||||||||||| Sbjct 47831 GAGACGTACAACCTTATGTCGCAAAAGTACTTTACCCACGCCTCGCCTACGCTCTTCAAC 47772 Query 249013 GCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCT 249072 ||||||||| || ||||| |||||||| ||| || ||||| | || ||||| Sbjct 47771 GCCGGTACCCCGCACCCGCAGCTCTCGTCGTGCTTCCTTGTTACCATGAAGGATGACTCG 47712 Query 249073 GTCGACGGCATTTATGACACGCTTAAACAGAC---GGCGAAGATTTCTAAATTCGCGGGC 249129 |||||||||| || || || || | |||| || | ||| || || || || Sbjct 47711 ATCGACGGCATCTACGATACCCTCA---AGACTTGTGCCATGATCTCCAAGACGGCCGGT 47655 Query 249130 GGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAAT 249189 || ||||| ||| | || |||||| | | || |||||||| || || || Sbjct 47654 GGCATCGGCCTCAACATCCATTGCATCCGTGGCACCGGCTCGTACATTGCCGGCACCAAC 47595 Query 249190 GGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATC 249249 || ||||| | || || || ||| | || || ||| | ||| || | | | || Sbjct 47594 GGTGTCAGCAACGGCATTGTGCCCATGCTCCGCGTCTTCAACAACACTGCGCGCTACGTC 47535 Query 249250 AACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCC 249306 |||||| || | || || | || || || || | ||| |||||| | Sbjct 47534 GACCAGGGTGGCAACAAGCGTCCCGGTGCCTTTGCTATTTACATTGAACCATGGCACTCG 47475 Query 249307 GATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGT 249366 || | || |||||||| ||| || |||||| |||| || ||| || | |||||| Sbjct 47474 GACGTCTTTGAGTTCCTCGACCTGCGCAAGAACCACGGAAAGGAGGAGGTGCGTGCGCGT 47415 Query 249367 GACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGC 249426 || |||||||| | || ||||| | || | |||||| | ||| || ||||| Sbjct 47414 GAGCTCTTCTATGCACTCTGGGTGCCTGATCTCTTCATGAAGAGGGTCGAGCAGAACGGC 47355 Query 249427 GATTGGACGCT 249437 || ||| |||| Sbjct 47354 GACTGGTCGCT 47344 >seq4481 Length=90198 Score = 84.2 bits (92), Expect = 5e-11 Identities = 123/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 115383 AACTTTCGAAAACCTTAATATCGCACATCTGCTCTGAATCGGTTCGATGATTTTGGTGGA 115442 ||| || | | ||| ||| || ||||| | ||| || ||||||||||||||| || Sbjct 19895 AACCTTTGCATACCGTAAGATGGCACAGCGCGACTGGATGGGTTCGATGATTTTGTTGCT 19836 Query 115443 GTTGTTGCAGACTATGATGAACCGCGTCGTGCTCGAGTAAACATCCATGATCCGTCGCAG 115502 | ||||| | | | ||||| || || ||||||| | |||||| ||| |||||| Sbjct 19835 CTGATTGCAAGCGAAGCAGAACCTGGTAGTATTCGAGTAGATCTCCATGGTCCTTCGCAG 19776 Query 115503 CGCCTGGAAAGCACCAGGTGTCATCGAGTCTGCCTCGTCGAGAACGACAATCTT 115556 |||||| ||| |||| ||||| || ||||||||||| | || ||||| Sbjct 19775 CGCCTGTTGCGCAGCAGGAGTCATACTATCCGCCTCGTCGAGGATGATGATCTT 19722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073700817368256