Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001660065.1_202016-06-08] 4,767 sequences; 20,622,051 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq4260 452 4e-122 seq3421 196 4e-45 seq1658 105 6e-18 seq1857 89.7 5e-13 >seq4260 Length=107242 Score = 452 bits (500), Expect = 4e-122 Identities = 1240/1880 (66%), Gaps = 42/1880 (2%) Strand=Plus/Plus Query 22115 GTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCCGTCTTCAGA 22174 ||||| || || ||||| | ||||| ||||| || ||||| || | |||||||| || Sbjct 46138 GTAAATTGGATCGCGTTCGACGCCGGCTTGGTCCGCAGATAGTATGTACCCGTCTTGAGT 46197 Query 22175 CCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGCAAGTCCATG 22234 ||| | ||||| ||||||| || ||||| || | | |||| | |||| | | Sbjct 46198 CCCTTTTTCCAGCCGTAAAAGTGCATCGAGGTGAGCTGTCCAAACGTCGGTGCCGAAAGG 46257 Query 22235 TACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCCATATTTATC 22294 | | |||| |||||| ||| ||||||||||||||| || || ||||| | | Sbjct 46258 TGAATGTTGAGCGACTGCGACTGGCAGATAAACGCTCCTCGGTCCGCAGCCATGT----C 46313 Query 22295 AATGTACGCATC--GAC--ATTTCCCATACGGTCTTGTACAGTTGCCTGATCTCTAACGG 22350 ||| ||| | | | || ||||| || ||||||||||| | | |||| ||| Sbjct 46314 GATGATCGCCTTCTGGCTGATCTCCCAGACCGTCTTGTACAGCTTCTTGATGCGGTCCGG 46373 Query 22351 TATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAATCGTATC 22410 || | | |||||| || ||| | ||||| || || ||||| || Sbjct 46374 AATGCCTGGCACGTTCTGGATCGATCCGCCGTGCGCGATGATACGGTTCTTCATCGTGTC 46433 Query 22411 GTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGG-TTCACCACTTGAAACT 22469 |||||||| || | || || | || | |||| |||||||| || |||| Sbjct 46434 GTTCCACAGGCCCTGCTCCACCAGCTCGCGCAACA-ACCACGGGTTCACCACCTGGAACT 46492 Query 22470 CGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGT 22529 | || | | || || || ||| |||||||| || | || ||||| | || || Sbjct 46493 CACCCGCGAGCACACGCCGAGAGTAGATGTTGGACGTATAAGGCTCGAAGCACTCGTTAA 46552 Query 22530 TTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCA 22589 ||||| |||||| |||||||||||||||||||| |||| ||| |||||||| | | Sbjct 46553 AGCCCAGGATCTGACTCGTCGAAGCGGTCGGCATCGGTGCCAGCAGCAGCGAGTTGCGAA 46612 Query 22590 AGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTCA 22649 |||||||| | || || ||||||| || |||||||||||| || |||||||| | Sbjct 46613 GCCCGTGCTTGGCGATCTTGGCCTTGAGCTCCGCCCAGTCCCACAGGTCCGACGGCGTGA 46672 Query 22650 CATTGTCCCACATATCGTATTGCAA--CACGCCGCGACTCGCCGGGCTGCCTTCGTACGT 22707 | ||||||| ||||| ||||| ||| | |||| || || ||| ||||||| Sbjct 46673 C---CCCCCACATGTCGTACTGCAACTCACCCTGCGA--AGCGGGCGAGCCGGCGTACGT 46727 Query 22708 TTCGTACGGACCATATATCGCGGCAAGTTCGCA-GCTCGCCTCCAACGCGCCGTAATATA 22766 ||||| || | | | || | ||||| | ||| ||||| ||| ||| || | Sbjct 46728 CTCGTAGCTGCCGTGCTGCTCAGCCAACTCGCACGATCG-CTCCAGTGCGGCGTGGTAGA 46786 Query 22767 TAGTCTCGAAGATTTTCTTGTTCAATTCGGCG-GCGGCGACGCTTTCGTACGGCATA-CG 22824 | ||||| ||||| | | |||| | ||| || || || | || || ||||| | Sbjct 46787 TGGTCTCAAAGATCTGCACGTTC-AGTCGCCGAGCCTCGGCCGACTCAAAC-GCATACCC 46844 Query 22825 CATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAG 22884 ||| |||| |||||| ||||| | |||||||| || || |||||||| |||| || Sbjct 46845 CATGATCATGAACGCATCCGCAAGGCCCTGAACACCGATCCCGATCGGACGGTGACGCAT 46904 Query 22885 ATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTT 22944 || ||| ||||| | ||||| | || ||||| | |||||| ||| Sbjct 46905 GTTGGACTTGCGCGCCTCCTCGACCGGATAGTAGTTAATGTCGATGATCTTGTTCAGGTT 46964 Query 22945 TCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCC-----CGAT 22999 || | || | | | |||||||| ||| | | | Sbjct 46965 CTTGCAGATGGCCTTGGCAACGCTGTGCAGACGCTTAAAGTCGT--ACGTCTTGGTCACT 47022 Query 23000 TGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTG 23059 | ||| ||| || | ||||||||||| || ||||| || ||||||||||| | Sbjct 47023 GGGTCAATGAACGTGGGCAGTGCGATCGAGGCGAGGTTGCACACTGCCACCTCGTC--GG 47080 Query 23060 GA-CG-TGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGC 23117 || || ||||||| | || |||||||| | ||| ||||| |||||||| | || Sbjct 47081 GAGCGCTGTACTCGATGATCTCGGTACACAAGTTGGAGCACTTGATCGTGCCGAGGTTCT 47140 Query 23118 TCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGA 23177 |||||||||| || || ||| | |||||||| || ||| | || ||||||||||| Sbjct 47141 TCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACAGGATGAAAGGGTTGCCCGTCTCGG 47200 Query 23178 CCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCTGC 23237 ||| ||||||| ||| || ||| | |||| || | || ||| | | | Sbjct 47201 TCTGTGACTCGAGGATGGCGTACCAGAGCTTCTGCGCTTTGACGGTGCGCTTCGAGCGAC 47260 Query 23238 CTTCTTCCTCGTACTTTTGGTACA-ACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGG 23296 | || ||||||| | ||| | ||| ||||| ||| ||||||| ||||||||||| Sbjct 47261 CCTCGGCCTCGTAGCGCTCGTAGAGGCGC-TCAAACTCGTCACCGTAGCAGTCGGCCAGA 47319 Query 23297 CCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATA 23356 || || | | | || |||||||| ||| || | || || | |||| Sbjct 47320 CCAGGGCACTCGTTGGGGCACATGAGCGACCAGTCGCCGTTCTGCTCGACCCTCTTCATG 47379 Query 23357 AAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCG 23416 || ||||| || | ||| || || ||||| || || || || ||||||||||| || ||| Sbjct 47380 AAGAGATCAGGCACCCAGAGTGCATAGAAGAGCTCACGCGCACGCACCTCCTCCTTTCCG 47439 Query 23417 GTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACG 23476 |||||| || || | || || || ||||||| ||||| || || | ||||| Sbjct 47440 TGGTTCTTGCGCAGGTCGAGGAACTCAAAGACGTCCGAGTGCCATGGTTCAATGTAAATA 47499 Query 23477 GCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTAC 23536 ||||| || || || | ||| ||||| ||||| |||||||| || || ||||||||| | Sbjct 47500 GCAAAGGCACCGGGACGCTTGTTGCCACCCTGGTCGACGTAGCGCGCAGTGTTGTTGAAG 47559 Query 23537 ACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCT 23596 || | ||||| ||||| | |||||| | ||| ||| || | ||| || Sbjct 47560 ACGCGGAGCATGGGCACAATGCCGTTGCTGACACCGTTGGTGCCGGCAATGTACGAGCCG 47619 Query 23597 TTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCG 23656 | | || | | || | || || || ||||| ||| ||| || || ||||| || Sbjct 47620 GTGCCACGGATGCAATGGATGTTGAGGCCGATGCCACCGGCCGTCTTGGAGATCATGGCA 47679 Query 23657 CATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAA 23716 || || || || ||||||||||| ||||| ||| || || | | || | ||| Sbjct 47680 CAAGTCTTGAGGGTATCGTAGATGCCGTCGATCGAGTCATCCTTCATGGTAACAAGGAAG 47739 Query 23717 CACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTA 23776 ||||| || | |||| | || ||| |||| ||| || || || |||||| ||| Sbjct 47740 CACGACGAGAGCTGCGGGTGCGGGGTACCGGCGTTGAAGAGCGTAGGCGAGGCGTGGGTA 47799 Query 23777 AAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGT 23836 ||||| | |||||| || |||||||| ||||||||| || ||||||| ||||| Sbjct 47800 AAGTACTTTTGCGACATAAGGTTGTACGTCTCGATGGCGCTCTCGATGTCCTGGCCGTGG 47859 Query 23837 ATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCT---CGACCGTGACGCCGTTA 23893 || |||| ||||| ||||| | ||||| || || | || ||||| | |||||| Sbjct 47860 ATGCCGACAGCGACTCGCATGAGCATGTGCTGGGGACGCTCTGCGACCTT---GCCGTTG 47916 Query 23894 ATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCA 23953 || || || ||| ||||| | | ||| || || || ||| ||| |||| |||||| Sbjct 47917 ATGCGGAGCAAATAGGAACGCTCGAGCGTCTTGAAGCCGAAAAAGTTGTAGTGGAAGTCA 47976 Query 23954 CGATCGTGCACTATGGCCGA 23973 || |||| | |||||||| Sbjct 47977 CGTTCGTAGATGATGGCCGA 47996 >seq3421 Length=130295 Score = 196 bits (216), Expect = 4e-45 Identities = 563/855 (66%), Gaps = 47/855 (5%) Strand=Plus/Minus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 |||||| | |||||||| ||||| || || || || ||||||| || || | ||||| Sbjct 34842 ATTTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCAGAGGAGATCGACCTT 34783 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || ||||| || ||| ||||| | || || || |||| | | ||||| Sbjct 34782 TCCAAGGACCTCCACGACTGGGACAACAAGCTGAACGACAATGAGCGCCACTTTATCTCG 34723 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 || ||| | ||||| ||||| || || |||||||| || |||||||| | || || | Sbjct 34722 CATGTGCTTGCGTTCTTCGCTGCGTCGGATGGTATCGTCAACGAGAACCTCGTTGAGCG- 34664 Query 57747 TTTTCACAA--GAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCA 57804 ||||| ||||| || | | ||||| | ||||| ||||| || || | | Sbjct 34663 -TTTCAGTTCGGAAGTTCAGGCCGCCGAGGCTCGTTGCTTCTACGGTTTCCAGATCATGA 34605 Query 57805 TTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACG 57864 | || ||| | || || || | || ||||| |||||||| || ||| | || | Sbjct 34604 TGGAGAACATCCACTCGGAGACCTACTCGCTGCTCATCGACACTTACATCCGTGA----G 34549 Query 57865 AC-GAGAAACGTAGA---CTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAG--- 57917 | ||| | ||| | ||||| |||| |||| || || || | ||| |||| Sbjct 34548 CCTGAGCAGCGTGAATATCTGTTTGACGCCGTCGAGACCATCCCGG---TCGTCAAGCAG 34492 Query 57918 AAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACG---GCCACGTTCGCCGAGAGG 57974 ||||| || ||| | | |||||| | ||| || | ||||| ||||||||| | Sbjct 34491 AAGGCCGACTGGGCTCTTCGATGGATCA---GCGACAAGCGTGCCACTTTCGCCGAGCGT 34435 Query 57975 CTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTT 58034 || ||||||| ||||||||||| || || || || |||||| || || | || || Sbjct 34434 CTGGTCGCGTTTGCCGCCGTCGAGGGCATCTTTTTCTCGGGCTCATTCGCCTCGATCTTC 34375 Query 58035 TGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGC 58094 ||| | ||||| ||||| || |||||||| || ||||| ||||||| | || ||||| Sbjct 34374 TGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACGTTCTCCAACGAGCTCATCTCGCGT 34315 Query 58095 GACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCG 58154 ||||||||||| || || || ||||| ||||| | | | ||| ||| | | Sbjct 34314 GACGAGGGTCTTCACACGGACTTTGCCTGCCTTCTCTTCAGCCAC---CTCAGGA----G 34262 Query 58155 ACGCGGGATCGCA-------TCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGA 58207 |||| | | || | | | || ||||| ||||| || | ||||| || | Sbjct 34261 GCGCGCGCACCCAGACACGGTGCTCAAGATCATCACTGAGGCCGTGGAAATCGAGAAGGC 34202 Query 58208 GTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAA 58267 ||| | |||| | | || || || | |||||||||||| | | |||| | Sbjct 34201 GTTCCTGTGCGAATCAATCCCCGTCGCGCTCATCGGTATGAACAGCAAGCTCATGTGCCA 34142 Query 58268 GTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGGAGAGC--GT-CATTA 58324 |||||||||| ||| ||||| | ||||| | | | | ||| | | || || || Sbjct 34141 ATACATTGAGTATGTCGCCGA---TCGCTTGCTGGTATCGCTCGGAAACCCAGTGCACTA 34085 Query 58325 CAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTT 58384 | | | | | ||||||||| ||||||| || ||| | || |||||||| ||||| Sbjct 34084 CGGCTCCACATGTCCGTTTGACTTTATGACCAACATTTCGTTGGAAGGCAAGACCAACTT 34025 Query 58385 TTTCGaaaaaaaaGT 58399 || || ||||| || Sbjct 34024 CTTTGAGAAAAAGGT 34010 >seq1658 Length=160837 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || |||||||| || ||||| |||| || || | || Sbjct 96622 ATGCAGATCTTTGTCAAGACGCTCACAGGCAAGACCATCACTCTCGAAGTCGAGTCTTCG 96681 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || |||||||||||| | || || || ||| Sbjct 96682 GACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGATCAG 96741 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || || ||||| ||| | ||||| | ||| || || || ||| Sbjct 96742 CAGCGTCTTATCTTTGCCGGCAAGCAGCTCGAAGATGGTCGCACTCTGTCGGACTACAAC 96801 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||||| || ||||| |||||||| |||| ||| Sbjct 96802 ATTCAGAAGGAATCCACTCTTCACTTGGTCCTT 96834 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || ||||| || || ||||| || || || |||| || || | || Sbjct 96394 ATGCAGATTTTTGTTAAGACGCTCACGGGCAAGACCATTACTCTCGAAGTCGAGTCCTCG 96453 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||||||||||||| | || || || ||| Sbjct 96454 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAG 96513 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || |||||||| || ||| | |||||| || | ||| || ||| Sbjct 96514 CAGCGTCTCATCTTCGCTGGTAAGCAGCTCGAAGACGGCCGAACGCTCTCCGACTACAAC 96573 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||||| ||||| ||||| ||||| || || Sbjct 96574 ATTCAGAAAGAGTCGACGCTTCACCTTGT 96602 >seq1857 Length=5366 Score = 89.7 bits (98), Expect = 5e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || || || ||||| || || || || || ||||| |||| || || | Sbjct 3604 AAGATGCAGATCTTTGTCAAGACCCTCACGGGTAAGACCATCACTCTCGAGGTGGAGTCT 3545 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| |||| | ||||| | || ||||||||| ||| | ||||||||| Sbjct 3544 TCGGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCCGAC 3485 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 ||||||||||| || |||||||| || ||| | || ||| Sbjct 3484 CAGCAGCGTCTGATCTTCGCTGGTAAGCAGCTCGAGGAC 3446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445739837894640