Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001660065.1_202016-06-08] 4,767 sequences; 20,622,051 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq4260 122 1e-22 seq3421 109 7e-19 >seq4260 Length=107242 Score = 122 bits (134), Expect = 1e-22 Identities = 446/695 (64%), Gaps = 10/695 (1%) Strand=Plus/Plus Query 63221 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63280 ||| || || | || ||||| | |||||| || |||| | || || | ||||| || Sbjct 47322 AGGGCACTCGTTGGGGCACATGAGCGACCAGTCGCCGTTCTGCTCGACCCTCTTCATGAA 47381 Query 63281 GAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTG 63339 ||||||||| | ||| || || ||| || || || | | | ||||| ||||| Sbjct 47382 GAGATCAGGCACCCAGAGTGC-ATAGAAGAGCTCACGCGCACGCACCTCCTCCTTTCCGT 47440 Query 63340 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 63399 ||||| || ||||||||| | | | || || ||||| ||||| | ||| || | Sbjct 47441 GGTTCTTGCGCAGGTCGAGGAACTCAAAGACGTCCGAGTGCCATGGTTCAATGTAAATAG 47500 Query 63400 CCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 63459 | | | || || || ||||| || ||||| || | ||| | || ||||| || | | Sbjct 47501 CAAAGGCACCGGGACGCTTGTTGCCACCCTGGTCGACGTAGCGCGCAGTGTTGTTGAAGA 47560 Query 63460 CTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCAC 63519 | | | ||| || | ||| ||||| | ||| ||||| |||| || || || Sbjct 47561 CGCGGAGCATGGGCACAATGCCGTTGCTGACACCGTTGGTGCCGGCAATGTACGAGCCGG 47620 Query 63520 TGGCACGAATATTACTAATTGAT----AGACCTATTCCCCCTGCCATTTTAGAGATTAAT 63575 || |||| || ||| ||| || || || || || ||| | || ||||| | Sbjct 47621 TGCCACGGATGC----AATGGATGTTGAGGCCGATGCCACCGGCCGTCTTGGAGATCATG 47676 Query 63576 GCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGA 63635 || || || | || || |||||||| || || ||||| ||||| ||| || Sbjct 47677 GCACAAGTCTTGAGGGTATCGTAGATGCCGTCGATCGAGTCATCCTTCATGGTAACAAGG 47736 Query 63636 AAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 63695 || || || | || | | | || || || || || | ||||| || ||||| Sbjct 47737 AAGCACGACGAGAGCTGCGGGTGCGGGGTACCGGCGTTGAAGAGCGTAGGCGAGGCGTGG 47796 Query 63696 GTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGA 63755 ||||| | |||| || | || ||||||||||| || || || || ||| Sbjct 47797 GTAAAGTACTTTTGCGACATAAGGTTGTACGTCTCGATGGCGCTCTCGATGTCCTGGCCG 47856 Query 63756 TGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTT 63815 || || || || ||||| ||||| | ||||||||| || | || | | ||| ||| Sbjct 47857 TGGATGCCGACAGCGACTCGCATGAGCATGTGCTGGGGACGCTCTGCGACCTTGCCGTTG 47916 Query 63816 ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 63875 || | ||| ||||| || | || || || || ||| ||||||| ||||| Sbjct 47917 ATGCGGAGCAAATAGGAACGCTCGAGCGTCTTGAAGCCGAAAAAGTTGTAGTGGAAGTCA 47976 Query 63876 CGTTCGTAAATAATAACCGAATTGAGCTTATCCTT 63910 |||||||| || || |||| | ||||| ||||| Sbjct 47977 CGTTCGTAGATGATGGCCGAGTCGAGCTGGTCCTT 48011 >seq3421 Length=130295 Score = 109 bits (120), Expect = 7e-19 Identities = 353/544 (65%), Gaps = 8/544 (1%) Strand=Plus/Plus Query 33596 GTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCC 33655 ||| ||||||||||| | || | ||||| || |||||||| |||||||| || || Sbjct 34300 GTGAAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAACGTGAGACCGGGCATGAGACC 34359 Query 33656 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGC 33715 ||||| || ||||| || || || |||||||| || || || ||||| || || || || Sbjct 34360 GCGCTTCTTGAGCCAGAAGATCGAGGCGAATGAGCCCGAGAAAAAGATGCCCTCGACGGC 34419 Query 33716 AGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC---TGTCATGTATCCACTTTTGAGC 33772 ||||| || | || | ||| | || ||| | |||| ||||| |||| Sbjct 34420 GGCAAACGCGACCAGACGCTCGGCGAAAGTGGCACGCTTGTCGCTGATCCATCGAAGAGC 34479 Query 33773 CCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttt 33832 ||| |||||||||| || || || || || || | ||| | ||| ||||| | Sbjct 34480 CCAGTCGGCCTTCTGCTTGACGACCGGGATGGTCTCGACGGCGTCAAACAGATATTCACG 34539 Query 33833 ttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTT 33892 | | | || | ||||| ||||| | || || | ||||| || ||||| Sbjct 34540 CTGCTCAGGCTCACGGATGTAAGTGTCGATGAGCAGCGAGTAGGTCTCCGAGTGGATGTT 34599 Query 33893 TTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACA 33952 || || ||||| || |||||||| || | |||||||| ||| ||||| | || Sbjct 34600 CTCCATCATGATCTGGAAACCGTAGAAGCAACGAGCCTCGGCGGCCTGAACTTCCGAACT 34659 Query 33953 AAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATAC 34012 || || || | | || || || || || ||||| || || || ||||| | || Sbjct 34660 GAAACGCTCAACGAGGTTCTCGTTGACGATACCATCCGACGCAGCGAAGAACGCAAGCAC 34719 Query 34013 ATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATT---CCAATCATTGATATCTT 34068 ||| ||||| | || | || ||| || || || ||| || | || || | Sbjct 34720 ATGCGAGATAAAGTGGCGCTCAT-TGTCGTTCAGCTTGTTGTCCCAGTCGTGGAGGTCCT 34778 Query 34069 TAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 34128 | || | || | || || | ||||| || || ||||| ||||| || ||||| | || Sbjct 34779 TGGAAAGGTCGATCTCCTCTGCGGTCCAGAAGGAAGCCTCGGCCTTCTTGTACATTTGCC 34838 Query 34129 AGAT 34132 | || Sbjct 34839 AAAT 34842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629780070743760