Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001660065.1_202016-06-08] 4,767 sequences; 20,622,051 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq4260 122 1e-22 seq3421 96.9 5e-15 >seq4260 Length=107242 Score = 122 bits (134), Expect = 1e-22 Identities = 467/730 (64%), Gaps = 10/730 (1%) Strand=Plus/Plus Query 65979 CGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAAC 66038 || || |||||||| || | | | ||| ||||| || || | || ||||| | | Sbjct 47287 CGCTCAAACTCGTCACCGTAGCAGTCGGCCAGACCAGGGCACTCGTTGGGGCACATGAGC 47346 Query 66039 GACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 66098 ||||| || |||| | || || | ||||| ||||||||||| | ||| || || ||| Sbjct 47347 GACCAGTCGCCGTTCTGCTCGACCCTCTTCATGAAGAGATCAGGCACCCAGAGTGC-ATA 47405 Query 66099 -AATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 66157 || | || | | | ||||| ||||| ||||| || ||||||||| | Sbjct 47406 GAAGAGCTCACGCGCACGCACCTCCTCCTTTCCGTGGTTCTTGCGCAGGTCGAGGAACTC 47465 Query 66158 CATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCC 66217 | | || | ||||| ||||| | ||| || || | | || || || ||||| || Sbjct 47466 AAAGACGTCCGAGTGCCATGGTTCAATGTAAATAGCAAAGGCACCGGGACGCTTGTTGCC 47525 Query 66218 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 66277 ||||| || | ||| | || ||||| || | || | | ||| || | ||| || || Sbjct 47526 ACCCTGGTCGACGTAGCGCGCAGTGTTGTTGAAGACGCGGAGCATGGGCACAATGCCGTT 47585 Query 66278 GGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGAT-- 66335 | ||| ||||| |||| || || || | |||| || ||| ||| Sbjct 47586 GCTGACACCGTTGGTGCCGGCAATGTACGAGCCGGTGCCACGGATGC----AATGGATGT 47641 Query 66336 --AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGA 66393 || || || || || ||| | || ||||| | || || || | ||||| |||| Sbjct 47642 TGAGGCCGATGCCACCGGCCGTCTTGGAGATCATGGCACAAGTCTTGAGGGTATCGTAGA 47701 Query 66394 TGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 66453 |||| || || |||||| ||||| ||| || || || || | || | | Sbjct 47702 TGCCGTCGATCGAGTCATCCTTCATGGTAACAAGGAAGCACGACGAGAGCTGCGGGTGCG 47761 Query 66454 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGAT 66513 || || || || || | ||||| || ||||| ||||| | |||| || | || | Sbjct 47762 GGGTACCGGCGTTGAAGAGCGTAGGCGAGGCGTGGGTAAAGTACTTTTGCGACATAAGGT 47821 Query 66514 TGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTA 66573 |||||||||| || || || || ||| || || || || ||||| ||||| | Sbjct 47822 TGTACGTCTCGATGGCGCTCTCGATGTCCTGGCCGTGGATGCCGACAGCGACTCGCATGA 47881 Query 66574 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 66633 ||||||||| || | || ||| |||| ||| || | ||| ||||| || | Sbjct 47882 GCATGTGCTGGGGACGCTCTGCGACCTTGCCGTTGATGCGGAGCAAATAGGAACGCTCGA 47941 Query 66634 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGA 66693 || || || || ||| ||||||| ||||| |||||||| || || |||||| || Sbjct 47942 GCGTCTTGAAGCCGAAAAAGTTGTAGTGGAAGTCACGTTCGTAGATGATGGCCGAGTCGA 48001 Query 66694 GTTTATCCTT 66703 | | ||||| Sbjct 48002 GCTGGTCCTT 48011 >seq3421 Length=130295 Score = 96.9 bits (106), Expect = 5e-15 Identities = 162/234 (69%), Gaps = 3/234 (1%) Strand=Plus/Plus Query 36172 GTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 36231 ||| ||||||||||| | || | |||||||| |||||||| |||||||| || || Sbjct 34300 GTGAAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAACGTGAGACCGGGCATGAGACC 34359 Query 36232 ACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGC 36291 ||||| || ||||| || || || || ||||| || || || || || || || || || Sbjct 34360 GCGCTTCTTGAGCCAGAAGATCGAGGCGAATGAGCCCGAGAAAAAGATGCCCTCGACGGC 34419 Query 36292 CGCAAAGGCAATAAGTCTCTCTCCATAACCGGCAC---TGTCATGTATCCACTTTTGAGC 36348 ||||| || | || | ||| | || ||||| |||| ||||| |||| Sbjct 34420 GGCAAACGCGACCAGACGCTCGGCGAAAGTGGCACGCTTGTCGCTGATCCATCGAAGAGC 34479 Query 36349 CCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 36402 ||| |||||||||| || || || || ||||| | || | ||| ||||| Sbjct 34480 CCAGTCGGCCTTCTGCTTGACGACCGGGATGGTCTCGACGGCGTCAAACAGATA 34533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658133581128280