Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001660065.1_202016-06-08] 4,767 sequences; 20,622,051 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq4260 131 2e-25 >seq4260 Length=107242 Score = 131 bits (144), Expect = 2e-25 Identities = 450/697 (65%), Gaps = 10/697 (1%) Strand=Plus/Plus Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033 ||||| || || || || ||||| | ||||| || || | | | || | ||||| Sbjct 47320 CCAGGGCACTCGTTGGGGCACATGAGCGACCAGTCGCCGTTCTGCTCGACCCTCTTCATG 47379 Query 72034 AAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCC 72092 ||||||||||| | ||| || || ||| || || || | | | |||||| ||||| Sbjct 47380 AAGAGATCAGGCACCCAGAGTGC-ATAGAAGAGCTCACGCGCACGCACCTCCTCCTTTCC 47438 Query 72093 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 72152 ||||| || ||||||||| | | | || || ||||| ||||| | ||| || Sbjct 47439 GTGGTTCTTGCGCAGGTCGAGGAACTCAAAGACGTCCGAGTGCCATGGTTCAATGTAAAT 47498 Query 72153 GGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 72212 || | | || || || ||||| || ||||| || | ||| | || ||||| || | Sbjct 47499 AGCAAAGGCACCGGGACGCTTGTTGCCACCCTGGTCGACGTAGCGCGCAGTGTTGTTGAA 47558 Query 72213 AACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCC 72272 || | | ||| || | ||| || ||| |||| ||||| |||| || || || Sbjct 47559 GACGCGGAGCATGGGCACAATGCCGTTGCTGACACCGTTGGTGCCGGCAATGTACGAGCC 47618 Query 72273 ACTGGCACGAATATTGCTAATTGAT----AGACCTATTCCCCCTGCCATTTTAGAGATTA 72328 || |||| || || ||| ||| || || || || || ||| | || ||||| | Sbjct 47619 GGTGCCACGGAT---GC-AATGGATGTTGAGGCCGATGCCACCGGCCGTCTTGGAGATCA 47674 Query 72329 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTA 72388 || || || | ||||| |||||||| || || |||||| ||||| ||| | Sbjct 47675 TGGCACAAGTCTTGAGGGTATCGTAGATGCCGTCGATCGAGTCATCCTTCATGGTAACAA 47734 Query 72389 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 72448 | || || || | || | | || || || || || | ||||| || |||| Sbjct 47735 GGAAGCACGACGAGAGCTGCGGGTGCGGGGTACCGGCGTTGAAGAGCGTAGGCGAGGCGT 47794 Query 72449 GCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATT 72508 | ||||| | |||| |||| || ||||||||||| || || || || ||| Sbjct 47795 GGGTAAAGTACTTTTGCGACATAAGGTTGTACGTCTCGATGGCGCTCTCGATGTCCTGGC 47854 Query 72509 GATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTAT 72568 || || || || ||||| ||||| | ||| ||||| || | || ||| |||| | Sbjct 47855 CGTGGATGCCGACAGCGACTCGCATGAGCATGTGCTGGGGACGCTCTGCGACCTTGCCGT 47914 Query 72569 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 72628 | || | ||| ||||| || | || || || || ||| ||||||| |||| Sbjct 47915 TGATGCGGAGCAAATAGGAACGCTCGAGCGTCTTGAAGCCGAAAAAGTTGTAGTGGAAGT 47974 Query 72629 CTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTT 72665 | |||||||| || || |||| | ||| | ||||| Sbjct 47975 CACGTTCGTAGATGATGGCCGAGTCGAGCTGGTCCTT 48011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671099208492920