Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001660065.1_202016-06-08] 4,767 sequences; 20,622,051 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq3421 260 2e-64 seq4260 185 1e-41 >seq3421 Length=130295 Score = 260 bits (288), Expect = 2e-64 Identities = 590/866 (68%), Gaps = 37/866 (4%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 |||||| |||||||||| ||||| |||| ||||| ||||| | || ||| |||| || Sbjct 34842 ATTTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCAGAGGAGATCGACCTT 34783 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 ||||||||||| |||| ||||| | ||| || | |||||| | ||||| ||| Sbjct 34782 TCCAAGGACCTCCACGACTGGGACAACAAGCTGAACGACAATGAGCGCCACTTTATCTCG 34723 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197 || | | || ||||| || | || ||||| ||||||||||| || || ||||| || Sbjct 34722 CATGTGCTTGCGTTCTTCGCTGCGTCGGATGGTATCGTCAACGAGAACCTCGTTGAG-CG 34664 Query 125198 ATTCTCTCAAGA-GTTGACCATTCCAGAGGTGTCGT-GCTTTTACGGATTCCAAATCATG 125255 ||| | || ||| | || |||| |||| |||| ||||| ||||| |||||| Sbjct 34663 TTTCAGTTCGGAAGTTCAGGCCGCC-GAGGC-TCGTTGCTTCTACGGTTTCCAGATCATG 34606 Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC- 125314 || |||||| | |||||||| | ||||| || || |||| ||||| || || || Sbjct 34605 ATGGAGAACATCCACTCGGAGACCTACTCGCTGCTCATCGACACTTACATCCGTGAGCCT 34546 Query 125315 --GCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCG-TCTATACGTAAAAA 125371 ||| ||| || | || ||| |||| |||| || | ||| || | | | || Sbjct 34545 GAGCAGCGTGAATATCTG---TTTGACGCCGTCGAGACCATCCCGGTCGTCAAGCAGAA- 34490 Query 125372 GGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCG---TACGCCGACAGACT 125428 ||| | |||| |||| |||||| ||||||| | | | |||||| | || Sbjct 34489 GGCCGACTGGGCTCTTCGATGGATCAG---CGACAAGCGTGCCACTTTCGCCGAGCGTCT 34433 Query 125429 GGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTG 125488 ||| || || |||||||| ||||||||||| || ||||| || || | ||||| || Sbjct 34432 GGTCGCGTTTGCCGCCGTCGAGGGCATCTTTTTCTCGGGCTCATTCGCCTCGATCTTCTG 34373 Query 125489 GCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGA 125548 ||||||||||||||| ||||||||||| || ||| | |||||| | || || || || Sbjct 34372 GCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACGTTCTCCAACGAGCTCATCTCGCGTGA 34313 Query 125549 CGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTG 125608 |||||| || ||| ||||||||| || || || || || || | | || | | Sbjct 34312 CGAGGGTCTTCACACGGACTTTGCCTGCCTTCTCTTCAGCCAC-CTCAG-GAGGCGCGCG 34255 Query 125609 CAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGA 125668 | | ||| || | ||| |||| || | || || |||||| || || | | Sbjct 34254 C--ACCCA-----GACACGGTGCTCAAGATCATCACTGAGGCCGTGGAAATCGAGAAGGC 34202 Query 125669 GTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGA 125728 ||| || |||||| | || ||| | || || |||||| ||||||| |||||| | Sbjct 34201 GTTCCTGTGCGAATCAATCCCCGTCGCGCTCATCGGTATGAACAGCAAGCTCATGTGCCA 34142 Query 125729 GTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGG---CCGCAAGATTTA 125785 ||||| |||| ||| || ||||| | ||| | | | | || || | || Sbjct 34141 ATACATTGAGTATGTCGCCGATCGCTTGCTG---GTATCGCTCGGAAACCCAGTGCACTA 34085 Query 125786 CAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTT 125845 | | ||| ||| ||||| || ||||||| ||| || | || || ||||||||||| Sbjct 34084 CGGCTCCACATGTCCGTTTGACTTTATGACCAACATTTCGTTGGAAGGCAAGACCAACTT 34025 Query 125846 TTTCGAGAAGAAGGTCAGC-GAGTAC 125870 || ||||| ||||| ||| |||||| Sbjct 34024 CTTTGAGAAAAAGGT-AGCAGAGTAC 34000 >seq4260 Length=107242 Score = 185 bits (204), Expect = 1e-41 Identities = 376/553 (68%), Gaps = 4/553 (1%) Strand=Plus/Minus Query 96825 GGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCACGATACGTTACACAGGGCGG 96883 ||| | ||||| |||||| | | | ||| || || | || ||||| ||||| || Sbjct 47582 GGCATTGTGCCCATGCTCCGCGTCTTCAACAACACTG-CGCGCTACGTCGACCAGGGTGG 47524 Query 96884 CAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGA 96943 ||| || || || || || | || | ||| | ||||| |||||| ||||||| ||||| Sbjct 47523 CAACAAGCGTCCCGGTGCCTTTGCTATTTACATTGAACCATGGCACTCGGACGTCTTTGA 47464 Query 96944 CTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTA 97003 || |||| ||||||| ||| || || |||| || || | || | || || Sbjct 47463 GTTCCTCGACCTGCGCAAGAACCACGGAAAGGAGGAGGTGCGTGCGCGTGAGCTCTTCTA 47404 Query 97004 TGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTACTGGAGCCT 97063 ||||||||||||||| ||| | ||||||||| | ||| | | ||| ||||| || Sbjct 47403 TGCACTCTGGGTGCCTGATCTCTTCATGAAGAGGGTCGAGCAGAACGGCGACTGGTCGCT 47344 Query 97064 AATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAA 97123 ||||||||| || || || |||||| |||| |||| || || ||||||||| | Sbjct 47343 CATGTGCCCCAACGAGTGCCCTGGTCTGGCCGACTGCTACGGTGACGAGTTTGAGCGCCT 47284 Query 97124 GTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGCACGAGAA-CTGT 97182 ||| | ||||||| ||||| || | | | ||| | || | |||| || | Sbjct 47283 CTACGAGCGCTACGAGGCCGAGGGTCGCTCGAAGCGCACCGTCAAAGCGC-AGAAGCTCT 47225 Query 97183 GGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATA 97242 || | |||||| | | | ||| ||||| || | || | ||| || |||||||| Sbjct 47224 GGTACGCCATCCTCGAGTCACAGACCGAGACGGGCAACCCTTTCATCCTGTACAAGGACG 47165 Query 97243 CCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCA 97302 ||| || ||||| |||||||| || | ||||| |||||| ||||||| |||| | Sbjct 47164 CCGCCAACCGCAAGAGCAACCAGAAGAACCTCGGCACGATCAAGTGCTCCAACTTGTGTA 47105 Query 97303 CGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGGCATCGGTCA 97362 | || || | |||||| | |||| |||||| |||||| ||| || || ||| || Sbjct 47104 CCGAGATCATCGAGTACAGCGCTCCCGACGAGGTGGCAGTGTGCAACCTCGCCTCGATCG 47045 Query 97363 ATCTGCCCAAGTT 97375 ||||||| ||| Sbjct 47044 CACTGCCCACGTT 47032 Score = 96.9 bits (106), Expect = 5e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 98040 TACAAGACTGTCTGGGAGATTCCGACC-AAGACGCTGATCGATATGGCTGCCGACAGAGG 98098 |||||||| ||||||||||| | | | ||| || | ||||| |||||||| ||| |||| Sbjct 46352 TACAAGACGGTCTGGGAGAT-CAGCCAGAAGGCGATCATCGACATGGCTGCGGACCGAGG 46294 Query 98099 TGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCG 98158 | | || |||| || ||| |||| | || || | | || || | | | Sbjct 46293 AGCGTTTATCTGCCAGTCGCAGTCGCTCAACATTCACCTTTCGGCACCGACGTTTGGACA 46234 Query 98159 TATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATCT 98218 | || ||||| |||||||||| ||||| ||||| ||||||||||| | |||||||| Sbjct 46233 GCTCACCTCGATGCACTTTTACGGCTGGAAAAAGGGACTCAAGACGGGTACATACTATCT 46174 Query 98219 GAGAACAAAGTCGGCCACCAATGCCATACCATTTACG 98255 | | || ||| |||| | || || || | ||||||| Sbjct 46173 GCGGACCAAGCCGGCGTCGAACGCGATCCAATTTACG 46137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741015042134920