Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001660065.1_202016-06-08] 4,767 sequences; 20,622,051 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq4260 244 1e-59 seq3421 134 1e-26 seq1658 122 8e-23 seq1857 113 4e-20 seq440 98.7 9e-16 >seq4260 Length=107242 Score = 244 bits (270), Expect = 1e-59 Identities = 991/1522 (65%), Gaps = 67/1522 (4%) Strand=Plus/Plus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 || || ||||| ||||| || || | |||||| || | || | ||| ||||| | || Sbjct 46477 TTCACCACCTGGAACTCACCCGCGAGCACACGCCGAGAGTAGATGTTGGACGTATAAGGC 46536 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || || |||||||| ||||||||| ||| |||| ||||| ||||| |||| | Sbjct 46537 TCGAAGCACTCGTTAAAGCCCAGGATCTGACTCGTCGAAGCGGTCGGCATCGGTGCCAGC 46596 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | | || ||||| || |||||||| ||| | |||| ||| |||| ||||| Sbjct 46597 AGCAGCGAGTTGCGAAGCCCGTGCTTGGCGATCTTGGCCTTGAGCTCCGCCCAGTCCCAC 46656 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTC----GCTGGCGGG 145293 || | |||| | || ||||||||||||||||||| |||| || |||| | Sbjct 46657 AGGTCCGACGGCGTGACCCCCCACATGTCGTACTGCAACTCACCCTGCGAAGCGGGCGAG 46716 Query 145294 GCTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTG----GCGAGCTCGCAAC-TCGCC 145348 | || | | | ||| ||||| || || || | |||||| |||| Sbjct 46717 CCGGCGT----ACGTCTCGTAGCTGCC----GTGCTGCTCAGCCAACTCGCACGATCGC- 46767 Query 145349 TCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCG 145408 ||||| ||| || || || ||||| || ||| ||| || || || || | Sbjct 46768 TCCAGTGCGGCGTGGTAGATGGTCTCAAAGATCTGCACGTTCAGTCGCCGAGCCTCGGCC 46827 Query 145409 CTCTCGTACGGCATGCGC-AGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCC 145467 ||| ||| ||| | | | | | || ||||| || || ||||| | || | || Sbjct 46828 GACTCAAACG-CATACCCCATGATCATGAACGCATCCGCAAGGCCCTGAACACCGATCCC 46886 Query 145468 GATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTC 145527 ||| || || || ||||||| | | | |||| ||||| ||||| ||| ||| Sbjct 46887 GATCGGACGGTGACGCATGTTGGACTTGCGCGCCTCCTCGACCGGATAGTAGTTAATGTC 46946 Query 145528 GATAATTTTATTCAAGTT-TCGCACTACTACCTTTGTAA---TGTGCCGCAACTTTTCAA 145583 ||| || || |||| ||| | ||| | |||| | || ||||| | ||| || Sbjct 46947 GATGATCTTGTTCAGGTTCTTGCAG-ATGGCCTTGGCAACGCTGTGCAGACGCTT---AA 47002 Query 145584 AGTCAAACCGA---GCCTC---GTCAACGACCACACAGCTATTGACGGCGATCGACGCCA 145637 |||| || | | | ||||| || || | | || ||||||| || | Sbjct 47003 AGTCGTACGTCTTGGTCACTGGGTCAATGA--ACGTGGGCAGTG----CGATCGAGGCGA 47056 Query 145638 AATTACAAACTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGC 145697 || || |||||| ||| |||| ||||||| | | |||||||| ||||| ||| Sbjct 47057 GGTTGCACACTGCCACCTCGTCGGGAGCGCTGTACTCGATGATCTCGGTACACAAGTTGG 47116 Query 145698 TACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGA 145757 || ||||| || || || || | ||| || || || | |||| ||||||||||| | Sbjct 47117 AGCACTTGATCGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACA 47176 Query 145758 GCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCA-AG-TCCTG 145815 | ||| | || ||| ||||| ||| | ||| | ||| || || || | ||| Sbjct 47177 GGATGAAAGGGTTGCCCGTCTCGGTCTGTGACTCGAGGATGG--CGTACCAGAGCTTCTG 47234 Query 145816 CGCACGCACC-TGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAA 145874 ||| || ||| ||| |||| ||||| | ||||| | |||||| ||||| Sbjct 47235 CGCTTTGACGGTGC-GCTTCGAGCGACCCTCGGCCTCGTAGCGCTCGTAGAGGCGCTCAA 47293 Query 145875 ACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATA 145934 || || ||||||||| |||| ||| || || |||| |||||| ||||| |||||||| Sbjct 47294 ACTCGTCACCGTAGCAGTCGGCCAGACCAGGGCACTCGTTGGGGCACATGAGCGACCAGT 47353 Query 145935 CGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGT 145994 ||||||| | ||| | || ||| || | ||| |||||||| || || || | | | Sbjct 47354 CGCCGTTCTGCTCGACCCTCTTCATGAAGAGATCAGGCACCCAGAGTGCATAGAAGAGCT 47413 Query 145995 CGCGCGCTTTGCAA-TCCTCAGCACCCATGTT-TCGCTTCAAATTAAGCACACT-ATAGA 146051 | ||||| ||| ||||| || ||| | || || | || | ||| | ||| Sbjct 47414 CACGCGCAC-GCACCTCCTCCTTTCCGTGGTTCTTGCG-CAGGTCGAGGA-ACTCAAAGA 47470 Query 146052 TGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTTG---CCACCCT 146108 ||||| |||||| |||||||| || | || | ||| || || ||| ||||||| Sbjct 47471 CGTCCGAGTGCCATGGTTCAATGTAAATAGCAAAGGCACCGGGACGCTTGTTGCCACCCT 47530 Query 146109 GGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTA 146168 |||| |||| || | ||||||| |||||||| | ||||||| | | |||| || | Sbjct 47531 GGTCGACGTAGCGCGCAGTGTTGTTGAAGACGCGGAGCATGGGCACAATGCCGTTGCTGA 47590 Query 146169 CGCCGTTCGTAGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGA 146228 | ||||| || | || | |||| | || | |||||| | || | ||||| Sbjct 47591 CACCGTTGGTGCCGGCAATGTACGAGCCGGTGCCACGGATGCAATGGATGTTGAGGCCGA 47650 Query 146229 GACCGCCG-CCGTACTTGGATATAGCGGCGCA-GTCGCCGAGCGTCTCGTAGATGCCGTC 146286 || ||| |||| |||||| || ||| || ||| ||| || |||||||||||||| Sbjct 47651 TGCCACCGGCCGT-CTTGGAGATCATGGCACAAGTCTT-GAGGGTATCGTAGATGCCGTC 47708 Query 146287 AAT---GCTATCGCTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGT 146343 || | ||| |||| ||| | || |||||||| | | ||||| ||| || Sbjct 47709 GATCGAGTCATC-CTTC--ATGGTAACAAGGAAGCACGACGAGAGCTGCGGGTGCGGGGT 47765 Query 146344 CCCCGCCGAGAACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATCATCCGATA 146403 || || ||| | ||| || ||||| ||||| ||| | ||| | || Sbjct 47766 ACCGGCGTTGAAGAGCGTAGGCGAGGCGTGGGTAAAGTACTTTTGCGACATAAGGTTGTA 47825 Query 146404 CGTTTCGATAGCG-TCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCA 146462 ||| ||||| ||| ||| || |||| | ||| || ||||| | |||||| |||||||||| Sbjct 47826 CGTCTCGATGGCGCTCTCGA-TGTCCTGGCCGTGGATGCCGACAGCGACTCGCATGAGCA 47884 Query 146463 TGTGTTGGGGCCGCTCCGCCACTTGATTGTCAATCTTTAACAAATAGCCGTTCTCCAGGG 146522 |||| ||||| ||||| || || | || || | ||||||| ||| || | Sbjct 47885 TGTGCTGGGGACGCTCTGCGACCTTGCCGTTGATGCGGAGCAAATAGGAACGCTCGAGCG 47944 Query 146523 TTTTGTATCCGAAAAATTTGTA 146544 | ||| | |||||||| ||||| Sbjct 47945 TCTTGAAGCCGAAAAAGTTGTA 47966 >seq3421 Length=130295 Score = 134 bits (148), Expect = 1e-26 Identities = 329/488 (67%), Gaps = 17/488 (3%) Strand=Plus/Minus Query 46100 AGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCGACTTTCGCCGAGCGTA 46159 |||| |||||||||| | ||||||| | || || ||||||||||||||| Sbjct 34493 AGAAGGCCGACTGGGCTCTTCGATGGATCAGCGACAAGCGTGCCACTTTCGCCGAGCGTC 34434 Query 46160 TGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCATCTTTT 46219 |||| || ||||| || |||||| ||||||| || ||| || ||| | ||||| | Sbjct 34433 TGGTCGCGTTTGCCGCCGTCGAGGGCATCTTTTTCTCGGGCTCATTCGCCTCGATCTTCT 34374 Query 46220 ACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCGC 46278 |||| || | || | |||||||||| || ||||| ||||||||| || ||||| Sbjct 34373 GGCTCAAGAAGCGCGGTC-TCATGCCCGGTCTCACGTTCTCCAACGAGCTCATCTCGCGT 34315 Query 46279 GACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACACTCGCGTGCACGACAAG 46338 |||||||| || || ||||||||||| || || || || | | | || || | Sbjct 34314 GACGAGGGTCTTCACACGGACTTTGCCTGCCTTCTCT---TCAGCCACCT-CAGGAGGCG 34259 Query 46339 CTTGCGCCC-GACACCGTGCTGAGCATGTTCAAGGAGGCGGTGGCCATTGAGAAGGAGTT 46397 | || ||| ||||| ||||| | || ||| ||||| |||| || ||||||| ||| Sbjct 34258 CGCGCACCCAGACACGGTGCTCAAGATCATCACTGAGGCCGTGGAAATCGAGAAGGCGTT 34199 Query 46398 TTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAAC-GCACAGTCAATGTGCGACT 46456 | | || | |||| || || | || |||||| ||| || |||||| | | Sbjct 34198 CCTGTGCGAATCAATCCCCGTCGCGCTCATCGGTATGAACAGCA-AGCTCATGTGCCAAT 34140 Query 46457 ACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCACCAGCCGAAGCATTTTCACG 46516 |||| |||| ||| || || || |||| || ||| | || ||| | ||| Sbjct 34139 ACATTGAGTATGTCGCCGATCGCTTGCTGGTATCGCTCGGAAACCCAGTGCACT---ACG 34083 Query 46517 CGCGCAA----TCCATTTGAGTTTATGAACAACATCTCCCTGGAGGGCAAAACTAATTTT 46572 || | | ||| ||||| ||||||| |||||| || |||| ||||| || || || Sbjct 34082 -GCTCCACATGTCCGTTTGACTTTATGACCAACATTTCGTTGGAAGGCAAGACCAACTTC 34024 Query 46573 TTCGAAAA 46580 || || || Sbjct 34023 TTTGAGAA 34016 >seq1658 Length=160837 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | |||| ||| | || | |||||||| || ||||||||||| ||| Sbjct 96620 CCACCGCGGAGTCGCAACACAAGGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCGGAG 96561 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||| || |||||||| || ||| |||| | ||||||||| || ||||| Sbjct 96560 AGCGTTCGGCCGTCTTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCAGGAGGA 96501 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||||| | || | || || | |||||||| Sbjct 96500 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTCGACT 96441 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| |||| ||| || || || || || || || ||||||||||| Sbjct 96440 TCGAGAGTAATGGTCTTGCCCGTGAGCGTCTTAACAAAAATCTGCAT 96394 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || || | ||| || || || || | || || ||||| ||||||||||| || Sbjct 96849 GCCTCCACGAAGACGAAGGACCAAGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCCGA 96790 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| || || ||||||||||| || |||| | ||||||||| || ||||| Sbjct 96789 CAGAGTGCGACCATCTTCGAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGATCAGGAGG 96730 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||| || ||||| | || | || || | ||||||| Sbjct 96729 AATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGAC 96670 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | ||| || || || || || || || || |||||||| Sbjct 96669 TTCGAGAGTGATGGTCTTGCCTGTGAGCGTCTTGACAAAGATCTGCAT 96622 >seq1857 Length=5366 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| ||||| || || | ||| |||||||| || |||||||| || Sbjct 3375 CCACCACGCAGACGAAGCACCAAGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAA 3434 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| |||||||| || ||| |||| | |||||||||||| || || Sbjct 3435 AGCGTACGTCCGTCCTCGAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGCGGA 3494 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || || | ||||| | Sbjct 3495 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCCACC 3554 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | ||| ||||| || || || || || || |||||||| Sbjct 3555 TCGAGAGTGATGGTCTTACCCGTGAGGGTCTTGACAAAGATCTGCAT 3601 >seq440 Length=208867 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| ||||| | || | |||||| ||||| || |||||||| || Sbjct 137703 CCACCACGCAGACGGAGCACAAGGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCCGAG 137762 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| |||||||| || ||| |||| | ||||||||||| || || Sbjct 137763 AGGGTGCGGCCATCCTCGAGCTGCTTACCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGA 137822 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||||| | || | || || | |||||| | Sbjct 137823 ATACCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCCACC 137882 Query 131188 TCGACGGTAACGGTTTTACCGGTT 131211 || | ||||| ||| ||||| ||| Sbjct 137883 TCAAGGGTAATGGTCTTACCTGTT 137906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471984673937280