Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001660065.1_202016-06-08] 4,767 sequences; 20,622,051 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1658 185 2e-41 seq1857 167 4e-36 seq440 127 4e-24 seq4260 102 2e-16 seq408 98.7 2e-15 >seq1658 Length=160837 Score = 185 bits (204), Expect = 2e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || ||||| || | ||| ||||| |||||||| || ||||| || |||||| Sbjct 96620 CCACCGCGGAGTCGCAACACAAGGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCGGAG 96561 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | |||||| || ||||| ||||| | || || || || ||| Sbjct 96560 AGCGTTCGGCCGTCTTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCAGGAGGA 96501 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| || ||||| ||||||||| ||||||||||| | || || ||| Sbjct 96500 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTCGACT 96441 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || ||||| || |||||||| ||||| || || |||||||| Sbjct 96440 TCGAGAGTAATGGTCTTGCCCGTGAGCGTCTTAACAAAAATCTGCAT 96394 Score = 179 bits (198), Expect = 7e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| ||||| || | |||||||| || ||||| || || || ||||| || || || Sbjct 96848 CCTCCACGAAGACGAAGGACCAAGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCCGAC 96789 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| ||||| || || || | || || || || ||| Sbjct 96788 AGAGTGCGACCATCTTCGAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGATCAGGAGGA 96729 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||||||||| ||||| ||||||||| ||||||||||| | || || ||| Sbjct 96728 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACT 96669 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || || ||||| |||||||| || |||||||| Sbjct 96668 TCGAGAGTGATGGTCTTGCCTGTGAGCGTCTTGACAAAGATCTGCAT 96622 >seq1857 Length=5366 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || || ||||| || |||||||| || || || Sbjct 3375 CCACCACGCAGACGAAGCACCAAGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAA 3434 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || ||||| || || | || |||||||| ||| Sbjct 3435 AGCGTACGTCCGTCCTCGAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGCGGA 3494 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| |||||||| ||||||||||| | || || || Sbjct 3495 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCCACC 3554 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || ||||||||||||||||| || |||||||| Sbjct 3555 TCGAGAGTGATGGTCTTACCCGTGAGGGTCTTGACAAAGATCTGCAT 3601 >seq440 Length=208867 Score = 127 bits (140), Expect = 4e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | || | ||| || || || || || |||||||| || || ||| Sbjct 137703 CCACCACGCAGACGGAGCACAAGGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCCGAG 137762 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| || || | || |||||||| ||| Sbjct 137763 AGGGTGCGGCCATCCTCGAGCTGCTTACCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGA 137822 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||| |||||||| ||||||||||| | || || || Sbjct 137823 ATACCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCCACC 137882 Query 68415 TCCAAGGTGATGGTTTTTCCCGT 68437 || | ||| ||||| || || || Sbjct 137883 TCAAGGGTAATGGTCTTACCTGT 137905 >seq4260 Length=107242 Score = 102 bits (112), Expect = 2e-16 Identities = 218/326 (67%), Gaps = 0/326 (0%) Strand=Plus/Plus Query 31701 CACACCGCCGTTTCGTCCGTAGAAGTGTATTCGACAATCTCGGCACAAAGATTGCTGCCC 31760 ||||| ||| ||||| | || |||| |||| ||||||| ||| | ||| || | Sbjct 47062 CACACTGCCACCTCGTCGGGAGCGCTGTACTCGATGATCTCGGTACACAAGTTGGAGCAC 47121 Query 31761 GTGATGGTGCCGGCATTGGACTGCATGTTCTTCACGTTCACGCTGTCCTTGTTGAGCACG 31820 |||| |||||| || ||| || |||| ||| || |||||||| || | | Sbjct 47122 TTGATCGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACAGGATG 47181 Query 31821 TAAGGCATGCCCGTCTCGATCTGCGTGATGATCATCGCATTCCAGACATCGCGCGCTTTG 31880 |||| ||||||||||| |||| | || || || | ||||| | |||||||| Sbjct 47182 AAAGGGTTGCCCGTCTCGGTCTGTGACTCGAGGATGGCGTACCAGAGCTTCTGCGCTTTG 47241 Query 31881 ACGACTTTCTTCGCACGCCCCTCGGACTCGTAGCGAAGATACAGGTCCTCGTACTCCTTG 31940 ||| ||||| || ||||||| ||||||||| || ||| ||| |||| | Sbjct 47242 ACGGTGCGCTTCGAGCGACCCTCGGCCTCGTAGCGCTCGTAGAGGCGCTCAAACTCGTCA 47301 Query 31941 CCAAAGGCATCGGTTAGACCGGGACACTCCTTGGGGTCGAAGAGCGACCATGCGACATCG 32000 || || |||| ||||| || ||||| |||||| | ||||||||| || | | Sbjct 47302 CCGTAGCAGTCGGCCAGACCAGGGCACTCGTTGGGGCACATGAGCGACCAGTCGCCGTTC 47361 Query 32001 GCCTCTACTCGCTTCATGAACAGGTC 32026 ||| || | ||||||||| || || Sbjct 47362 TGCTCGACCCTCTTCATGAAGAGATC 47387 >seq408 Length=48276 Score = 98.7 bits (108), Expect = 2e-15 Identities = 359/549 (65%), Gaps = 26/549 (5%) Strand=Plus/Minus Query 225458 GAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAGGTGCGTGA-TGAG 225516 |||||||| ||||||||||||| | | || | ||| ||||| || | ||| Sbjct 25907 GAGTCGTGCGACACAATGATGGCGGTGGCAGTCTTGAGGTTGACGAGGTA-GTCAGTGAT 25849 Query 225517 CCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGTCAGC 225576 ||| |||||| ||||||| |||||| ||||| || || || |||| ||||| || Sbjct 25848 CCACTTGACGTTGACAACGTCCAAGTGGTTGGTAGGCTCATCGAGCAGCAAAATGTCGGC 25789 Query 225577 ATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAGGGAGCC 225636 | | |||||||| || | || | | |||||| ||||| || || || || | | Sbjct 25788 CTTGAACAGGATGGCACGGGCAAGGGCGACCTTCATCTTCCAACCACCAGAGAGACCGGC 25729 Query 225637 GATTGAAACAGAGTGCTTA---GCTTCGTCAAAGCCGTACTCCAGGAGCGTCTGGATAAT 225693 ||| | |||| || | || ||||| |||||| ||| |||| || || | Sbjct 25728 GATGGGC---GAGTTCTGACGGGCATCGTCGAAGCCGACCTCGTGGAGGGTAGCGACA-- 25674 Query 225694 GCGCTCGGGAGAGCTGCGAGCGGCAACGTTGGGGTCGGACGAGAGGTAA--TCATATACG 225751 || |||| | | | || | ||| | | |||| | || | ||| || || Sbjct 25673 GC-CTCGTCGCGGGT-CATGCTGAGACGCTCG--TCGG-CAAG-GATAAACTCGAGAACA 25620 Query 225752 GTCATGTCCGAGAC----AGACGCGTCAATGTCGTGGTCCACGTACACCGTCCGGAGCTG 225807 |||||| |||| ||| |||| | |||||| ||||||||| || |||| || Sbjct 25619 GTCATG----AGACCCTCAGAGCCGTCCAAGTCGTGCTCCACGTACCAGGTTCGGACCTC 25564 Query 225808 AGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGTACTCTT 225867 | | |||||||| || | |||||| || | || || || | |||||| ||| Sbjct 25563 ATCGGGCGAAGGGAAGCCTTCGACCTGGCCGTTGGTGATGGCGCGCATGAGGGTAGACTT 25504 Query 225868 GCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAGGCGCGT 225927 || | ||||| ||||| ||| ||||| | | || ||||||| | ||| | Sbjct 25503 TCCGGAACCGTTACGACCGCAGAGACCGTACTTGTGACCACGCTTGAGGCGGAGAGTGGC 25444 Query 225928 GGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACAGGTCCTC 225987 | ||| || || || ||| |||| ||||| || ||||||| || | ||| ||||| || Sbjct 25443 AGTGTTGAGCAGAATTTTGGCACCGTAGGCGAGCGAGAACTGACAGTTGCAGAGGTCTTC 25384 Query 225988 ACCCTCCTC 225996 ||||||||| Sbjct 25383 ACCCTCCTC 25375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921567482825240