Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001660065.1_202016-06-08] 4,767 sequences; 20,622,051 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq4260 403 3e-107 seq3421 325 7e-84 >seq4260 Length=107242 Score = 403 bits (446), Expect = 3e-107 Identities = 1233/1876 (66%), Gaps = 85/1876 (5%) Strand=Plus/Plus Query 243743 AACTGGA-CGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTGAGTCC 243801 || |||| || || ||||| |||| ||||||| ||| ||||| | || ||||||||||| Sbjct 46141 AATTGGATCGCGTTCGACGCCGGC-TTGGTCCGCAGATAGTATGTACCCGTCTTGAGTCC 46199 Query 243802 ACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGGTCGTC 243861 | |||| ||| | |||||| | || |||| | || | | |||| Sbjct 46200 CTTTTTCCAGCCGTAAAAGTGCATCGAGGTGAGCTG-TCCA-----AAC-----GTCG-- 46246 Query 243862 CTCGCACAGAAAG----AGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTG 243917 | | ||||| | |||||| ||||| |||| || || | | || || | Sbjct 46247 ---GTGCCGAAAGGTGAATGTTGAGCGACTGCGACTGGCAGATAAACGCTCCTCGGTCCG 46303 Query 243918 CGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGA 243977 | |||||| ||||| ||||||| ||||| | |||||||||| | ||||| Sbjct 46304 CAGCCATGTCGATGATCGCCTTCTGGCTGATCTCCCAGACCGTCTTGTACAGCTTCTTGA 46363 Query 243978 GGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGC 244037 | | || || | ||| | |||||| | ||| || ||| |||||| || | Sbjct 46364 TGCGGTCCGGAATGCCTGGCACGTTCTGGATCGATCCGCCGTGCGCGATGATACGGTTCT 46423 Query 244038 GCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCCT---GTTCA 244094 ||| | ||||||||||||||| |||||| | |||| || || ||||| Sbjct 46424 TCATCGTGTCGTTCCACAGGCCCT---GCTCCACCAGCTCGCGCAACAACCACGGGTTCA 46480 Query 244095 CCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGA 244154 ||||||| ||||| |||| ||||| || || ||||| |||| | ||||||| Sbjct 46481 CCACCTGGAACTCACCCGCGAGCACACGCCGAGAGTAGATGTTGGACGTATAAGGCTCGA 46540 Query 244155 TGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCA 244214 || ||| | |||||| ||||| ||| || |||||||| || | || ||||| Sbjct 46541 AGCACTCGTTAAAGCCCAGGATCTGACTCGTCGAAGCGGTCGGCATCGGTGCCAGCAGCA 46600 Query 244215 GACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCACATGC 244274 | ||| | | |||||| | ||| | ||||||| ||||||||||| | Sbjct 46601 GCGAGTTGCGAAGCCCGTGCTTGGCGATCTTGGCCTTGAGCTCCGCCCAGTCCCACAGGT 46660 Query 244275 CCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGG 244334 |||| | ||| || ||||||||||| |||||| | |||| || | | Sbjct 46661 CCGACGG-------CGT--GACCCCCCACATGTCGTACTGCAACTCACCCT-GCGAAGCG 46710 Query 244335 GGCT-GCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCG-TC 244392 ||| ||| |||| ||| |||| |||| ||| |||| || || | ||| || Sbjct 46711 GGCGAGCCGGCGTACGTCTCGTAGCTGCCGTGCTGCTCAGCCAACTCGCA-CGATCGCTC 46769 Query 244393 GAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGG-GCCTTGCCGC 244451 || ||||||| |||||||||||| |||||| | ||||| ||||| | |||| | | Sbjct 46770 CAGTGCGGCGTGGTAGATGGTCTCAAAGATCTGCACGTTCA-GTCGCCGAGCCTCGGCCG 46828 Query 244452 AGGTGAAGGGGATGCCC-ATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCG 244510 | | || | || ||| || |||||||| | || || || ||||| || ||||| ||| Sbjct 46829 AC-TCAAACGCATACCCCATGATCATGAACGCATCCGCAAGGCCCTGAACACCGATCCCG 46887 Query 244511 ATGGGTCTGTGTCGCTTGTTGGA---GCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCG 244567 || || | ||| ||| ||||||| |||| | ||| || || || |||| | Sbjct 46888 ATCGGACGGTGACGCATGTTGGACTTGCGCGCCTCCTCG---ACCGGATAGTAGTTAATG 46944 Query 244568 TCGATCACCTTGTTGAGGTT---GCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGA 244624 ||||| | |||||| ||||| || | || | || ||| || ||| ||| | Sbjct 46945 TCGATGATCTTGTTCAGGTTCTTGCAGATGGCCTTGGCAACGCTGTG---CAGACGCTTA 47001 Query 244625 AAGTCGTACTCGTAGGGATC-CTCGG-CGATGGTGATCCTCACAAACTCGTTGAGGGCGA 244682 ||||||||| | || || || || | ||| ||| | || |||| Sbjct 47002 AAGTCGTACGTCTTGG--TCACTGGGTCAATG------------AACGTGGGCAGTGCGA 47047 Query 244683 CGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGC 244742 ||| |||||||| || |||||||| || | | |||||| || |||||||| | Sbjct 47048 TCGAGGCGAGGTTGCACACTGCCACCTCGTCGGGAGCGCTGTACTCGATGATCTCGGTAC 47107 Query 244743 AGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGT 244802 | | ||| ||||||||| ||||| |||| || || ||| |||| |||| ||||| Sbjct 47108 ACAAGTTGGAGCACTTGATCGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGT 47167 Query 244803 CCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGA 244862 ||||||| || ||||| || || |||||| ||| | |||||| | || ||||| Sbjct 47168 CCTTGTACAGGATGAAAGGGTTGCCCGTCTCGGTCTGTGACTCGAGGATGGCGTACCAGA 47227 Query 244863 GGTCCCTAGCCTTGACCGTCC--TGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAG 244920 | | | || ||||| || | | ||||| ||||| ||||||||||| ||| || Sbjct 47228 GCTTCTGCGCTTTGACGGTGCGCTTCGAGCGA--CCCTCGGCCTCGTAGCGCTCGTAGAG 47285 Query 244921 GGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAG 244980 | ||| |||||| || || ||| | || || |||||| ||||||||||| Sbjct 47286 GCGCTCAAACTCGTCACCGTAGCAGTCGGCCAGACCAGGGCACTCGTTGGGGCACATGAG 47345 Query 244981 ACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTG 245040 ||| |||||| | || |||||||| ||||||||| || || | |||||| || | Sbjct 47346 CGACCAGTCGCCGTTCTGCTCGACCCTCTTCATGAAGAGATCAGGCACCCAGAGTGCATA 47405 Query 245041 GAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTC 245100 |||||| || | | | | ||| ||| || |||||| | ||| || | || || Sbjct 47406 GAAGAGCTCACGCGCACGCACCTCCTCCTTTCCGTGGTTCTTGCGCAGGTCGAGGAACTC 47465 Query 245101 AAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCC 245160 ||||||||| |||||| || || ||||| | ||| | ||| ||||| ||||||||||| Sbjct 47466 AAAGACGTCCGAGTGCCATGGTTCAATGTAAATAGCAAAGGCACCGGGACGCTTGTTGCC 47525 Query 245161 TCCCTGGTCCACCATCCTCTCGAGCG-CGTTGAAGATGCGCAGGGTAGGCACTATGCCGT 245219 |||||||| || | | | || | |||||||| ||| || | ||||| ||||||| Sbjct 47526 ACCCTGGTCGACGTAGCGCGC-AGTGTTGTTGAAGACGCGGAGCATGGGCACAATGCCGT 47584 Query 245220 TAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACA 245279 | | ||||||||||| ||||| | ||| |||| | || | |||| | Sbjct 47585 TGCTGACACCGTTGGTGCCGGCAATGTACGAGCCGGTGCCACGGATGCAATGGATGTTGA 47644 Query 245280 TGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGC 245339 ||| | || ||||| ||||||||| | ||| || |||||| ||| || |||| Sbjct 47645 GGCCGATGCCACCGGCCGTCTTGGAGATCATGGCACAAGTCTTGAGGGTATCGTAGATGC 47704 Query 245340 CCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGC 245399 | || || ||| ||||||| | | || ||||| || || ||||| || | ||| Sbjct 47705 CGTCGATCGAGTCATCCTTCATGGTAACAAGGAAGCACGACGAGAGCTGCGGGTGCGGGG 47764 Query 245400 TGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGGAACCCGT 245459 | | | |||||| || || || ||||||||||||||| ||| | | || Sbjct 47765 TACCGGCGTTGAAGAGCGTAGGCGAGGCGTGGGTAAAGTACTTTTGCGACATAAGGTTGT 47824 Query 245460 ACGTCTGGAGCAGAGC-GTCGATGTTGTCGCCGTGGATCTGCAGGGCGCACCTCATGAGG 245518 |||||| || | || ||||||| | ||||||||| | ||| | |||||| Sbjct 47825 ACGTCTCGA-TGGCGCTCTCGATGTCCTGGCCGTGGATGCCGACAGCGACTCGCATGAGC 47883 Query 245519 GTGTGCTGGGGCGTCTCGATGGGTCCCTCGGGTCCCT--TGAGCATGTAGGAGCGCTCGA 245576 |||||||||| ||| || | || | || | ||||| ||||| ||||||| Sbjct 47884 ATGTGCTGGGGACGCTC--TGCGACCTTGCCGTTGATGCGGAGCAAATAGGAACGCTCGA 47941 Query 245577 GCGTCTTGAACCCAAA 245592 |||||||||| || || Sbjct 47942 GCGTCTTGAAGCCGAA 47957 >seq3421 Length=130295 Score = 325 bits (360), Expect = 7e-84 Identities = 582/834 (70%), Gaps = 32/834 (4%) Strand=Plus/Minus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 |||||||||||||| || ||| ||||||||| |||||||| ||||| |||||||| Sbjct 34833 ATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCAGAGGAGATCGACCTTTCCAAGGAC 34774 Query 42369 ACGGCCGGCTGGGAGT-CA--CTGTCTGAGAACGAAA---AGTTTTTCCTCAAAAACATA 42422 || |||||| || ||| || || || | ||| || || | | Sbjct 34773 CTCCACGACTGGGACAACAAGCTGAACGACAATGAGCGCCACTTTATC-TCGCATG--TG 34717 Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || || |||||||| || || || || || ||||| |||||||| | | |||| Sbjct 34716 CTTGCGTTCTTCGCTGCGTCGGATGGTATCGTCAACGAGAACCTCGTTGAGCGTTTCAGT 34657 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 || || ||| | ||||| || ||||||||||| |||||||| || |||||| Sbjct 34656 TCGGAAGTTCAGGCCGCCGAGGCTCGTTGCTTCTACGGTTTCCAGATCATGATGGAGAAC 34597 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCGAG 42599 | ||||| ||| ||| | ||||||| |||| ||||||| || || | || Sbjct 34596 ATCCACTCGGAGACCTACTCG---CTGCTCATCGACACTTACATCCGTGAGCCTGAGCAG 34540 Query 42600 CGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGG 42659 ||| | ||||| | ||| | ||||| || || | ||||| ||||||| |||||| Sbjct 34539 CGTGAATATCTGTTTGACGCCGTCGAGACCATCCCGGTCGTCAAGCAGAAGGCCGACTGG 34480 Query 42660 GCGCTCAACTGGATCGAGAGTCCCGAC-GCAACGTTCGGCGAGAGGCTGGTAGCCTTTAC 42718 || || |||||| || | | | || || |||| |||| | ||||| || ||| | Sbjct 34479 GCTCTTCGATGGATC-AGCGACAAGCGTGCCACTTTCGCCGAGCGTCTGGTCGCGTTTGC 34421 Query 42719 CGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA 42778 |||||||||||||||||| ||||||||| | |||||||| ||||||||||||||| || Sbjct 34420 CGCCGTCGAGGGCATCTTTTTCTCGGGCTCATTCGCCTCGATCTTCTGGCTCAAGAAGCG 34361 Query 42779 -GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGC 42837 ||| || |||||||| ||||| ||||| ||||| |||||| | |||||||| || | Sbjct 34360 CGGTCTC-ATGCCCGGTCTCACGTTCTCCAACGAGCTCATCTCGCGTGACGAGGGTCTTC 34302 Query 42838 ATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAA---GG 42894 | | ||||||||||||||| || ||| |||||||||||| | || | || | | Sbjct 34301 ACACGGACTTTGCCTGCCTTCTCTTC---AGCCACCTCAGG---AGGCGCGCGCACCCAG 34248 Query 42895 AGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGT 42954 | ||| | |||||||| ||||||||||| |||||||||| |||||| | | Sbjct 34247 ACACGGTGCTCAAGATCATCACTGAGGCCGTGGAAATCGAGAAGGCGTTCCTGTGCGAAT 34188 Query 42955 CGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACG 43014 | | ||||| | || |||| |||||| | | ||||||||| | ||||| |||| | Sbjct 34187 CAATCCCCGTCGCGCTCATCGGTATGAACAGCAAGCTCATGTGCCAATACATTGAGTATG 34128 Query 43015 TCGCCGACCATCTCCTGTGCCAGATGGG--TCTCAGCCGCCTCTACAACACGCCGTGCCC 43072 ||||||| | | ||| | | || | ||| | |||| | | | || || Sbjct 34127 TCGCCGATCGCTTGCTGGTATCGCTCGGAAACCCAG--TGCACTACGGCTCCACATGTCC 34070 Query 43073 CTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAA 43126 || ||||||||| ||||| |||||||| |||||||||||||| || ||||| Sbjct 34069 GTTTGACTTTATGACCAACATTTCGTTGGAAGGCAAGACCAACTTCTTTGAGAA 34016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944282929187920