Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001660065.1_202016-06-08] 4,767 sequences; 20,622,051 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq4260 343 1e-89 >seq4260 Length=107242 Score = 343 bits (380), Expect = 1e-89 Identities = 1087/1663 (65%), Gaps = 44/1663 (3%) Strand=Plus/Minus Query 93772 GGCAGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGC 93831 |||| ||| | ||||| || || || |||| ||||| ||||| |||| || |||||| Sbjct 47912 GGCAAGGTCGCAGAGCGTCCCCAGCACATGCTCATGCGAGTCGCTGTCGGCATCCACGGC 47853 Query 93832 CACGACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATG 93891 || ||||| || | | | | | || ||| | | ||| | |||| Sbjct 47852 CAGGACATCGAGAGCGCCATCGAGACGTACAACCTTATGTCGCAAAAGTACTTTACCCAC 47793 Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 ||| | || || || |||||||| || |||||| || ||| | || ||||| ||||| Sbjct 47792 GCCTCGCCTACGCTCTTCAACGCCGGTACCCCGCACCCGCAGCTCTCGTCGTGCTTCCTT 47733 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 | || | |||| ||||| ||| ||| || | ||| | ||||||| ||||| | Sbjct 47732 GTTACCATGAAGGATGACTCGATCGACGGCATCTACGATACCCTCAAGACTTGTGCCATG 47673 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||||| || || || || ||||| ||| |||| | | |||| || || || Sbjct 47672 ATCTCCAAGACGGCCGGTGGCATCGGCCTCAACATCCATTGCATCCGTGGCACCGGCTCG 47613 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 ||||| ||| ||||| || | ||||||| | || || |||||||| ||||||||| Sbjct 47612 TACATTGCCGGCACCAACGGTGTCAGCAACGGCATTGTGCCCATGCTCCGCGTCTTCAAC 47553 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 ||| | ||||||||||| ||||||||||| | | | ||| | || || | || Sbjct 47552 AACACTGCGCGCTACGTCGACCAGGGTGGCAACAAGCGTCCCGGTGCCTTTGCTATTTAC 47493 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 | || || |||||| ||||||| | ||| |||||||||| ||||||||||| || Sbjct 47492 ATTGAACCATGGCACTCGGACGTCTTTGAGTTCCTCGACCTGCGCAAGAACCACGGAAAG 47433 Query 94252 GATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 || || | | || | || |||||||| || ||||||||||| || || || ||||| Sbjct 47432 GAGGAGGTGCGTGCGCGTGAGCTCTTCTATGCACTCTGGGTGCCTGATCTCTTCATGAAG 47373 Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCC 94371 | |||||| | ||| || |||| || | || ||||| || || || || ||| || Sbjct 47372 AGGGTCGAGCAGAACGGCGACTGGTCGCTCATGTGCCCCAACGAGTGCCCTGGTCTGGCC 47313 Query 94372 GACGTTTGTGGATCGCG-TTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGG-----C 94425 ||| | || | || ||||| | | || | || ||||| | |||| | Sbjct 47312 GACTGCTACGG-TGACGAGTTTGAGCGCCTCTACGAGCGCTACGAGGCCGAGGGTCGCTC 47254 Query 94426 AAGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTG 94485 | || | | || | | || |||||| ||| | ||| | || |||| Sbjct 47253 GAAGC--GCACCGTCA---AAGCGCAGAAGCTCTGGTACGCCATCCTCGAGTCACAGACC 47199 Query 94486 GAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAG 94545 |||||||| | || | |||| ||| ||||||| | | |||| |||| ||||||| || Sbjct 47198 GAGACGGGCAACCCTTTCATCCTGTACAAGGACGCCGCCAACCGCAAGAGCAACCAGAAG 47139 Query 94546 CACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCG 94605 ||||||| ||||||| |||| || |||| |||||||| ||||||| | |||| Sbjct 47138 AACCTCGGCACGATCAAGTGCTCCAACTTGTGTACCGAGATCATCGAGTACAGCGCTCCC 47079 Query 94606 GACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCC 94665 |||||| | || ||||| ||||| | ||| ||| ||| |||| ||| | || Sbjct 47078 GACGAGGTGGCAGTGTGCAACCTCGCCTCGATCGCACTGCCCACGTTCAT------TG-- 47027 Query 94666 TACACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCG-CGGGAAGG--ATG 94722 || | || ||| ||| || | ||| | || || || | |||| || Sbjct 47026 -ACCCAGTGACCAAGACGTACGA-CTTTA--AGCGTCTGCACAGCGTTGCCAAGGCCATC 46971 Query 94723 GTCTTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAAC 94782 | ||||||||||| | | ||||||| |||| ||| || ||| ||||||| || Sbjct 46970 TGCAAGAACCTGAACAAGATCATCGACATTAACTACTATCCGGTCGAGGAGGCGCGCAAG 46911 Query 94783 TCAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTG 94842 || ||| || || || || ||||| ||||| || ||||| | ||||| ||| | || Sbjct 46910 TCCAACATGCGTCACCGTCCGATCGGGATCGGTGTTCAGGGCCTTGCGGATGCGTTCATG 46851 Query 94843 ATGAT-GCGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGA 94901 || || | || || | | || || | ||| || | | |||| || | || || || Sbjct 46850 ATCATGGGGTATG-CGTTTGAGTCGGCCGAGGCTCGGCGACTGAACGTGCAGATCTTTGA 46792 Query 94902 AAGCATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATC-GGACGGCGGGC 94960 | ||| || ||| || || | | ||| | | |||| | || | | ||||| | Sbjct 46791 GACCATCTACCACGCCGCACTGGAGCGATCGTGCGAGTTGG-CTGAGCAGCACGGCAG-- 46735 Query 94961 CACACGAATCGTTCCGCGGATCGCC--CTTGGAACAGGGCATTTTTCAGTTCGACCTCTG 95018 |||| ||| | ||| ||||| ||| | ||||| || |||| |||| | || Sbjct 46734 -CTACGAGACGTACGCCGGCTCGCCCGCTTCG--CAGGGTGAGTTGCAGTACGACATGTG 46678 Query 95019 GGGTGTGAAGCCCTCGGGTCTGTACGACTGG--GAAGCTCTACGCGCTGATGTTATCAAA 95076 ||| || | ||| |||| |||| |||||| | ||||| | || || | ||| Sbjct 46677 GGGGGTCACGCCGTCGGACCTGTGGGACTGGGCGGAGCTCAAGGCCAAGA--TCGCCAAG 46620 Query 95077 CACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATC 95136 ||||| | ||| ||||||| |||| || ||||| || || || ||| |||||| Sbjct 46619 CACGGGCTTCGCAACTCGCTGCTGCTGGCACCGATGCCGACCGCTTCGACGAGTCAGATC 46560 Query 95137 CTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTC 95196 || ||| ||||||| ||||| || | || |||||| | ||| |||| |||||| Sbjct 46559 CTGGGCTTTAACGAGTGCTTCGAGCCTTATACGTCCAACATCTACTCTCGGCGTGTGCTC 46500 Query 95197 GCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTG 95256 || || || |||| || | ||| | | | || || ||| | | ||| || Sbjct 46499 GCGGGTGAGTTCCAGGTGGTGAACCCGTGGTTGTTGCGCGAGCTGGTGGAGCAGGGCCTG 46440 Query 95257 TGGGGTGACAAGGTCAAGAACCAACTGCTACGCGC-CAACGGCTCCGTCCAGAACATCCC 95315 ||| |||| | | ||||||| | | ||||| | ||| || |||||||| | || Sbjct 46439 TGGAACGACACGATGAAGAACCGTAT-CATCGCGCACGGCGGATCGATCCAGAACGTGCC 46381 Query 95316 GCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGCGT 95375 || ||||| ||||||| ||| |||||||| || ||||||||| ||| | Sbjct 46380 AGGCATTCCGGACCGCATCAAGAAGCTGTACAAGACGGTCTGGGAGATCAGCCAGAAGGC 46321 Query 95376 GATACTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAG 95418 ||| ||||| || || | ||| || | || ||||||||| Sbjct 46320 GATCATCGACATGGCTGCGGACCGAGGAGCGTTTATCTGCCAG 46278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494693720681320